Protein Info for PFR28_00379 in Pseudomonas sp. RS175

Annotation: Cobalt-zinc-cadmium resistance protein CzcA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1021 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details transmembrane" amino acids 336 to 355 (20 residues), see Phobius details amino acids 362 to 382 (21 residues), see Phobius details amino acids 388 to 412 (25 residues), see Phobius details amino acids 427 to 451 (25 residues), see Phobius details amino acids 464 to 486 (23 residues), see Phobius details amino acids 534 to 552 (19 residues), see Phobius details amino acids 865 to 884 (20 residues), see Phobius details amino acids 891 to 911 (21 residues), see Phobius details amino acids 917 to 935 (19 residues), see Phobius details amino acids 965 to 985 (21 residues), see Phobius details amino acids 991 to 1015 (25 residues), see Phobius details PF00873: ACR_tran" amino acids 6 to 1013 (1008 residues), 560.3 bits, see alignment E=8.1e-172 PF03176: MMPL" amino acids 844 to 1013 (170 residues), 28.4 bits, see alignment E=8.1e-11

Best Hits

KEGG orthology group: None (inferred from 73% identity to abo:ABO_2522)

Predicted SEED Role

"RND efflux transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1021 amino acids)

>PFR28_00379 Cobalt-zinc-cadmium resistance protein CzcA (Pseudomonas sp. RS175)
MGFNLSEWALRNRQIVLFLMLLLAIVGALSYTKLGQSEDPPFTFKAMVIRTNWPGATAEE
MSRQVTERIEKKLMETGDYEKIVSFSRPGESQVTFMARDSLHSAQIPELWYQIRKKVADI
RHTLPPGIQGPFFNDEFGTTFGNIYALTGDGFDYGVLKDYADRVQIQLQRVKDVGKVELI
GLQDEKIWIELSNVKLATLGLPLAAVQQALEEQNAVSTAGFFETGSERLQLRVSGNFQTV
EEIRSFPIRVADRTFRIDDVADVRRGFNDPPAPRMRFMGEDAIGLAVAMKDGGDILILGK
ALEAEFARIQNNLPAGMQLRKVSDQPAAVKTGVGEFVQVLVEALTIVLLVSFFSLGLRTG
MVVALAIPLVLAMTFAAMYYLGIGLHKISLGALVLALGLLVDDAIIAVEMMAIKMEQGFD
RIKAASYAWTSTAFPMLTGTLITAAGFLPIATAQSGTGEYTRSIFQVVTLALVASWVAAV
VFVPYLGEKLLPDLAKIHAARHGTRDGQPDPYGTPFYQRVRRLVEWCVRRRKTVIALTVL
LFVGSVVLFRFVPQQFFPASGRLELMVDLKLEEGASLSNTAEQVKRLEAMLKDHPGIDNY
VAYVGTGSPRFYLPLDQQLPAPSFAQFVVLAKTIEDREPLRSWLISTLNEQFPTLRSRVT
RLENGPPVGYPVQFRVTGEHIEEVRALARKVATKVRENPYVANVHLDWEEPSKVVYLNVD
QERARALGVSTVDLSKFLQSSLIGSSVSQYREDNELIEILLRGTVHERTELSLLPSLAVP
TENGTSVALSQIATLEYGFEEGVIWHRNRLPSVTVRADIYGKEQPATLVQQIFPTLDPIR
AELPDGYLLEVGGTVEDSARGQKSVNAGVPLFIVVVLTLLMLQLRSFSRTAMVFLTAPLG
LIGVTLFLLVFRQPFGFVAMLGTIALSGMIMRNSVILVDQIEQDIEAGLTPWQAIIEATV
RRFRPIVLTALAAVLAMIPLSRSLFFGPMAVAIMGGLIVATALTLLFLPALYAAWFRVKK
T