Protein Info for PFR28_00217 in Pseudomonas sp. RS175

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 597 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF06980: DUF1302" amino acids 14 to 597 (584 residues), 575 bits, see alignment E=1e-176

Best Hits

KEGG orthology group: None (inferred from 96% identity to pba:PSEBR_a4701)

Predicted SEED Role

"FIG067310: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (597 amino acids)

>PFR28_00217 hypothetical protein (Pseudomonas sp. RS175)
MTTITMRAIFKPQALAVAVALGCCAQAQAVSFNIGEIEGQFDSSLSVGASWGMRDADRDL
VGTVNGGRGQSSTGDDGRLNFKKGETFSKIFKGLHDLELKYGDTGVFVRGKYWYDFELKD
EGREFKDISDSNRKEGAKSSGAQILDAFVYHNYSIADLPGTVRAGKQVVSWGESTFIGNS
INSINPVDVSAFRRPGAEIKEGLIPVNMLFASQGLTDKLTIEGFYQLEWDQTVVDNCGTF
FGNDVVADGCTSGYTVGSPAIAPFVPLTQAFGQEIQVSSEGVIIPRGGDRDARDSGQWGT
ALRWLGDDTEYGLYFMNYHSRTPTVGTTTAGLSTLAALPGMVAIANGLVPGSGAGLAQSV
MLGRGGYYLEYPEDIRLYGASFSTTLPTGTAWTGEISYRPNAPVQVNTNDLTLALVNPIA
GGAASPIATAPGADNTGYRRKEITQIQSTMTHFFDQVLGADRLTLVGEAAVVHVGGLESK
DQLRYGRDSVYGQYGFNGDTDGFVTSTSWGYRARAILDYSNVVAGVNFKPNLSWSHDVSG
YGPNGLFNEGAKAVSVGVDADYRNTYTASLSYTDFFGGDYNVLEDRDFLALSFGVNF