Protein Info for PFR28_00159 in Pseudomonas sp. RS175

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1267 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details transmembrane" amino acids 1215 to 1234 (20 residues), see Phobius details TIGR02099: TIGR02099 family protein" amino acids 10 to 1266 (1257 residues), 1157.3 bits, see alignment E=0 PF13116: DUF3971" amino acids 515 to 792 (278 residues), 163.1 bits, see alignment E=1.1e-51 PF13502: AsmA_2" amino acids 1016 to 1260 (245 residues), 174.9 bits, see alignment E=2.1e-55

Best Hits

KEGG orthology group: None (inferred from 90% identity to pba:PSEBR_a832)

Predicted SEED Role

"FIG005080: Possible exported protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1267 amino acids)

>PFR28_00159 hypothetical protein (Pseudomonas sp. RS175)
MERLIRILATLTRWGLGLCALLLVLLALYVSLGRELAPLVAEYRAEVETRAGDALGMPVH
IGSLEGGWSALAPILSAHDVTVGDGANALHLDQVRAVPDLWGSLLARQVRIAHLELGGLK
VSLKEGADGQWALEGLPVKDDQPLDPQQLLERMQMISRLSILDSQVTLQPLEQSPLTLTY
VGLSLKTGATRQRLDARLTLPDGQPVALNLRTRIRASDWKNGQAEAYLSLPQSDWSKWLP
KGLTRQWHFSQIKAGGELWLSWGAGTLQSAAVRLNAPQLTGAYAERKPVQVRNLALDGYF
QRGADGFTATFDSLAMSLGETRWESRLQLQQSAATEKAEELWHLQADRLDLTPLTPLLHS
LAPLPEGVATAIDRLKVTGALRNVLLDYRPQNAGDRKVSFATNLDTVGFDAYRGAPAARN
VSGSLSGDLGGGELRMDSKDFVLHLDPIFAKPWQYLQANARLTWKLDKQSFTLIAPYLKV
LGEEGRIAGDFLIRLHLDHSQEDYMDLRVGLVDGDGRYTAKYLPAVLSPALDEWLRTAIV
KGAVDQGFFQYQGSLNHGAGDAARSISLFFKVHDAELAFQPGWPSVSKVSGDVFVEDSGV
RIYASQGQLLDTQVKDVTVEIPHAPSGQPSHLLLDGGFAGGLGDGLKILQTAPIGTAETF
AGWEGEGSLQGNVKLDIPLVKGEQPKILVDFNTDKARLKLSEPALELTQLKGDLRFDSSK
GLSGKNISAQAFDRPVTAQIFAEGRAGALNTRITASGRVETKKLTDWLGVTQALPVSGVI
PYQLQVILDGADSQLSVNSNLKGVAVNLPAPFGLAADVGRDTVFRMTLQGAERRYWVDYG
DVANFTYAAPSGKVAEGRGELLLGDGDAVLPGAKGIRLRGSLPELDVEPWQELVNKYAGH
DPGGSARQLLSGADLKVGKLTAMGTTLDQVALQLDRKPDAWALRLDSQQAKGNVSLPDAK
AAPIGIKLDYVRLPAADPTVQADENAPDPLASVDPTRIPAMDIAIGQLFQGTDLIGAWSL
KVRPTAKGIALSNLDMGLKGMVLNGSGGWEGAPGATSSWYKGRISGKNLADVLKGWGFAP
SVTSQEFRLDVDGRWPGSPAWVATKRFSGSLDASLSKGQFVEIEGSAQALRVFGLLNFNS
IGRRLRLDFSDLFGKGLSYDRVKGLLVASDGVYVTREPITLTGPSSNLELNGTLDMVGDR
VDAKLLVTLPVTNNLPIAALIVGAPAVGGALFLIDKLIGDRVARFASVRYDVKGPWKEPK
ITFDKPF