Protein Info for PFR28_00105 in Pseudomonas sp. RS175

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 954 transmembrane" amino acids 589 to 611 (23 residues), see Phobius details PF00359: PTS_EIIA_2" amino acids 4 to 140 (137 residues), 101.1 bits, see alignment E=1.3e-32 PF00381: PTS-HPr" amino acids 286 to 366 (81 residues), 61.9 bits, see alignment E=1.2e-20 PF05524: PEP-utilisers_N" amino acids 405 to 520 (116 residues), 76.9 bits, see alignment E=3.7e-25 TIGR01417: phosphoenolpyruvate-protein phosphotransferase" amino acids 407 to 952 (546 residues), 495.3 bits, see alignment E=2.2e-152 PF00391: PEP-utilizers" amino acids 545 to 617 (73 residues), 76.9 bits, see alignment 2e-25 PF02896: PEP-utilizers_C" amino acids 646 to 926 (281 residues), 364 bits, see alignment E=1.4e-112

Best Hits

KEGG orthology group: K02768, PTS system, fructose-specific IIA component [EC: 2.7.1.69] K08483, phosphotransferase system, enzyme I, PtsI [EC: 2.7.3.9] K11183, phosphocarrier protein FPr (inferred from 97% identity to pba:PSEBR_a791)

Predicted SEED Role

"Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)" in subsystem Fructose and Mannose Inducible PTS or Fructose utilization or Mannitol Utilization (EC 2.7.3.9)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.1.69, 2.7.3.9

Use Curated BLAST to search for 2.7.1.69 or 2.7.3.9

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (954 amino acids)

>PFR28_00105 hypothetical protein (Pseudomonas sp. RS175)
MLELNPEQISMAQTAVDKAAALQLLADKLVADGLVAEGYLAGLQAREAQGSTFLGQGIAI
PHGTPQTRDLVHSTGVRLLQFPDGVDWGDGQIVYLAIGIAAKSDEHLRLLQLLTRALGET
DLGQALRRASSAEALLKLLQGAPQELALDAQMIGLGVSADDFEELVWRGARLLRQADCVS
NGFAGVLQQVDALPLGDGLWWLHSEQTVKRPGLAFVTPDKPIRYLGQPLSGLFCLASLGE
AHQALLERLCALLIEGRGHELGRATSSRKVLEVLGGELPADWPSARIGLANAHGLHARPA
KILAQLAKSFEGEIRVRIVDGQDSAVSAKSLSKLLSLGARRGQILEFIAEPSIANDALPA
LLAAIEEGLGEEVEPLPPPSAPRETVMAEVATVMLAPESGSLIQAVAAAPGIAIGPAHIQ
VLQAIDYPLRGESAAIERERLQNALSQVRRDIQGLIERAKAKAVREIFITHQEMLDDPEL
TDEVDTRLKLGESAQAAWMGVIEAAAKEQEALQDALLAERAADLRDVGRRVLAQLCGVET
PNEPEQPYILVMDEVGPSDVARLDPSRVAGILTARGGATAHSAIVARALGIPALVGAGAA
VLLLAPGTPLLLDGQRGRLHVDPDAATLQRAVEERDTREQRLKVAAQQRHQPALTRDGHA
VEVFANIGESAGVASAVEQGAEGIGLLRTELIFMAHTQAPDEAIQEAEYRKVLDGLAGRP
LVVRTLDVGGDKPLPYWPIAKEENPFLGVRGIRLTLQRPQIMEAQLRALLRSADNRPLRI
MFPMVGSVEEWRQARDMTERLRREIPVADLQLGIMIEVPSAALLAPVLAKEVDFFSVGTN
DLTQYTLAIDRGHPSLSAQADGLHPAVLQLIDITVRAAHAHGKWVGVCGELAADPLAVPV
LVGLGVDELSVSARSIAEVKARVRELTLEQAKALAQEALAVGSANDVRTLVEAL