Protein Info for PFR28_00059 in Pseudomonas sp. RS175

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 936 PF01565: FAD_binding_4" amino acids 41 to 177 (137 residues), 121 bits, see alignment E=9.7e-39 PF02913: FAD-oxidase_C" amino acids 267 to 513 (247 residues), 214.2 bits, see alignment E=7.4e-67 PF13183: Fer4_8" amino acids 537 to 608 (72 residues), 40.2 bits, see alignment 1.2e-13 PF13534: Fer4_17" amino acids 539 to 609 (71 residues), 34 bits, see alignment 1e-11 PF12838: Fer4_7" amino acids 539 to 608 (70 residues), 33.8 bits, see alignment 1.2e-11 PF02754: CCG" amino acids 704 to 794 (91 residues), 20.8 bits, see alignment E=1e-07 amino acids 833 to 892 (60 residues), 13.3 bits, see alignment 2.3e-05

Best Hits

KEGG orthology group: None (inferred from 93% identity to pba:PSEBR_a750)

Predicted SEED Role

"Predicted D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing" in subsystem Lactate utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (936 amino acids)

>PFR28_00059 hypothetical protein (Pseudomonas sp. RS175)
MTLPAPFLRDVHQLIPPKRRFDDPLSTLAFGTDASFYRLIPKLVVRVESEDEVVALLQLA
QRDQVPVTFRAAGTSLSGQAISDSVLIVLGDNWNGREIREQGSQIRLQPGVIGAQANAWL
APFGRKIGPDPASINACKIGGIVANNASGMCCGTAQNTYHTLAGIRLVLADGTRLDTEDD
SSVAAFRTSHGDLLEQLATLGRETRTNTELAARIRHKYRLKNTTGLSLNALVDFDDPLDI
LSHLLVGSEGTLGFISAVTYNTVVDHPHKASALIVFPDVETCCNAVTVLKSQPVSAVELL
DRRSLRSVQDKPGMPDFVQHLSPQACALLIESRAASSSLLQEQLARIMASLASFPVEKRI
DFTEDPKENARLWAIRKDTFPAVGAVRKTGTTVIIEDVTFPVEQLAVGVNRLIELFDKHH
YDEAILFGHALEGNLHFVFTQGFNNPEEVARYQAFMDDVAHLVAVEFGGSLKAEHGTGRN
MAPFVELEWGSDAYQLMWRLKRLLDPNGILNPDVVLSEDPQIHLKHLKPLPAADEIIDKC
IECGFCEPVCPSKDLTLSPRQRIVIWRDIRAKKRSGIDTSALETAYQYQGIDTCAATGLC
AQRCPVGINTGELVKKLRGRTATRKKTADWLASNFATALQGARFTLHVANGARMLLGAPR
LTRLSGGLNRLSKGRVPQWTNAMPQPERPIRFSPAAADERPRVVYLAACVSRAMGPAAGD
KEQTSLYEKTQRLLEKAGYQVVFPDNVDNLCCGQPFASKGYAEQAEDKRQEMIGALLHAS
RGGLDPIYCDTSPCTLRLVQDLGDVRLDLYDPVRFIRTHLMDRLEFTPQEAPIAVHVTCS
TQHLGESQALIDLARKCSKNVVIPEGIHCCGFAGDKGFTTPELNAHSLRTLKDAVQHCSE
GISTSRTCEIGLTQHGAIDYHGLVYLVDRVTQARAR