Protein Info for PFLU_RS29845 in Pseudomonas fluorescens SBW25

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1559 transmembrane" amino acids 708 to 730 (23 residues), see Phobius details amino acids 751 to 770 (20 residues), see Phobius details PF20178: DUF6543" amino acids 369 to 623 (255 residues), 122.4 bits, see alignment E=1.3e-39

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU6063)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K4F0 at UniProt or InterPro

Protein Sequence (1559 amino acids)

>PFLU_RS29845 hypothetical protein (Pseudomonas fluorescens SBW25)
MNDTALSPSANDLLTQLATGPSLREVAAATLRSALAELYPDLDIDPNLAILVTPRWQSVS
GEVVPDLPHLQSLAGALARSALTNVALTWIDGEHYLINQTQEQANTHVSVQVDRIAQLIN
ELAPLLFVSYQEQQLDFWNQSGGQNGPRWKTLARTLRNLWNVHTVDDWDDDECAMARNVF
HYPEYAQRQPHDNYDAHVYLIDMDEQAGSVSKHLNVTSMALVVGQLGTRELILGYSIATG
YKKFSSMKAFGEYLAPHPHLFAGREIHWRLFEPSGNFFEYQASSLISLQIEALRHIAFDD
EDIKPLSPADSAKKELHAFTQQDQSRLGWARDSLPGWLQQASSPDQSAYGRYMMDLAALN
LQENGKTYMDDIPAVGDFARDALRAQMIKDHPEAANVNLENVQIAVTSAVIWGTLAVPGQ
TQTQTFTLTELALENLIALPLGNKVVIYRNGTVTPIWMTAQYLEKLITQVDIGKHYPALI
KSKLLEDPAQSLRRQKLYTEQLRLQLPLLALQYKIRGLHGLTEQGYRYVCAVMNTETEKQ
RVDGYPVVIRPLALYPKRRLTTAVDTVDNMFIIGPQAPKNGPCLLYRPLSNEPLMEFASE
ANLLYEIKQSATLRQSILAWLPDKERTAYGQFVFTGTLPSPWVFTSLLNDPLNALVMTGP
IRFGNEVLRNDYFATLFKTHAMALANLADRQSVSNAEGRWESLKHMGWQIFTAALPFMGK
TVGAASWIWQLMDDLQHVVDAREINERPAELSAWVDILLTLGMVLTMHISTQRRPSAAIE
KETRASSEPGESSAPSKHPKHPKPSEPAEPSKPPPAMVLIQKPTITAGELPADHQGTLHA
SGALTQSRRNLGAILDALMVEKPSSLSEQYKEDTAYKHLYSAGEHWYAPVGTRWFEVDVD
ENDSVLIVDPKQSQRTGFPLTSNRAGQWFIDIRFRLKASGLRRLRQKGQRLKPPKIKDLR
EQLNSFDKQLMQRHSELEALREAIAATPEDAQEAARTSYLAQADNHIKELDVTISQLKSL
KIIDTVPNYLDGMYEYLTNQIFVARSAINEQLDGFQQQLRSVEGHMDPDDDTLATLPLST
YQKVYEVTQDMIERLTFIETPLREMRELGERGVRFATTHGLGLANVSLTDLKAFKISLST
FLCLNETKTESLPAAREAVARIIETAELAVQSLRVALDPENEATQDQLIETLDSLVDQFA
SVDQNLVELPADFPDDLQKTPLANLRKQIDEFAQNATRELTGLLRERKAQTLEPMPGPSR
PSSRVTKRVIKTHLKGIVIGEERLPDAEGSTALVEVKEPLTGKVIATFHEKEPGVWVEQL
PAARSTSRTQARNLKQSTTHGQALLDTLEAFITRTEVLSNEAGWLPVTIEERISNRIEQL
MHASQEIEEALTLSNLTESTTHPSAMLNKRLSAAISKLQGERKRLHIHMLKTRQPTAAHV
ELLLKEGVVTIKPPTGARIKLTGRHSGFLQEYPVVDIQTKKTLWYAHFHYTALTGSEENF
TAAHLKTPDQRGLGGKYERRNDASRNNISIYRSEISPQLARMLFFKSKPPQPAVEEPQA