Protein Info for PFLU_RS29565 in Pseudomonas fluorescens SBW25

Annotation: glycine zipper 2TM domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 308 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details transmembrane" amino acids 64 to 82 (19 residues), see Phobius details amino acids 94 to 110 (17 residues), see Phobius details PF13441: Gly-zipper_YMGG" amino acids 64 to 110 (47 residues), 44.3 bits, see alignment 1.8e-15 PF13488: Gly-zipper_Omp" amino acids 67 to 115 (49 residues), 35.4 bits, see alignment 1.2e-12 PF05433: Rick_17kDa_Anti" amino acids 68 to 108 (41 residues), 25.8 bits, see alignment 1.2e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU6006)

Predicted SEED Role

"Autotransporter adhesin"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K494 at UniProt or InterPro

Protein Sequence (308 amino acids)

>PFLU_RS29565 glycine zipper 2TM domain-containing protein (Pseudomonas fluorescens SBW25)
MLFSRKAVSKRHLLLIAAGFSTVLTGCATSPASKVTSSTKVEYYPNCYEPVQHLRATDSD
MTKSVVTGAAIGAAGGALLGALTGDKEKRGRNAAIGAAGGALAGGAAGYYTERQKQIADD
NQRIASYAADVNKSASDIDRSTAYAKASQQCYQSAFTKLVADRKAKTVNDTEGRKRLAEI
VSGLKESNDLIVAVNGKAAEDLNNYTQAYEKDLQQVGVQRTDVVTVAKADVTPAVTSGKK
KGTGTKPPKKPVLPTVPTEAVSTEKTFQTAQTKQDESKKVASAGKAQLEGSCRDPNLADW
APVPCPNV