Protein Info for PFLU_RS28935 in Pseudomonas fluorescens SBW25

Annotation: DUF4442 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 161 transmembrane" amino acids 14 to 34 (21 residues), see Phobius details amino acids 56 to 68 (13 residues), see Phobius details PF14539: DUF4442" amino acids 10 to 152 (143 residues), 85.4 bits, see alignment E=2e-28

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU5878)

Predicted SEED Role

"FIG00954652: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K3W9 at UniProt or InterPro

Protein Sequence (161 amino acids)

>PFLU_RS28935 DUF4442 domain-containing protein (Pseudomonas fluorescens SBW25)
MRKWLIERLGKARLLRWIMTLYPPYLGAGVSVRHMSADFRHVKVRMGLGWYNCNYVGTQF
GGSLYSMVDPFYMLMLMENLGRDYIVWDKAASIDFVSPGKGPVYAEFSIDEALLDEVRRH
TEGGEKYLPHLKVQIHDGSGTLVARVDKTLYVRRKPPVRQA