Protein Info for PFLU_RS26565 in Pseudomonas fluorescens SBW25

Annotation: rRNA maturation RNase YbeY

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 164 PF02130: YbeY" amino acids 15 to 141 (127 residues), 130.3 bits, see alignment E=2e-42 TIGR00043: rRNA maturation RNase YbeY" amino acids 36 to 142 (107 residues), 126.8 bits, see alignment E=1.9e-41

Best Hits

Swiss-Prot: 100% identical to YBEY_PSEFS: Endoribonuclease YbeY (ybeY) from Pseudomonas fluorescens (strain SBW25)

KEGG orthology group: K07042, probable rRNA maturation factor (inferred from 100% identity to pfs:PFLU5406)

Predicted SEED Role

"Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K2K8 at UniProt or InterPro

Protein Sequence (164 amino acids)

>PFLU_RS26565 rRNA maturation RNase YbeY (Pseudomonas fluorescens SBW25)
MLELDLQLATEAPAPSEAQFREWCALALRQRTADSELTIRLVDEPEGRELNHTWRQKDYA
TNVLSFPADVPDELLDIPLLGDLVICVEVVEREAKEQGKELEAHWAHLVIHGCLHLLGYD
HIDDDEAEEMETLEQTLLAELGHPDPYADDDAQKHSTVTIKDSE