Protein Info for PFLU_RS26545 in Pseudomonas fluorescens SBW25

Annotation: sel1 repeat family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 184 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF08238: Sel1" amino acids 63 to 98 (36 residues), 28.1 bits, see alignment 1.1e-10 amino acids 99 to 130 (32 residues), 21.7 bits, see alignment 1.2e-08

Best Hits

KEGG orthology group: K07126, (no description) (inferred from 100% identity to pfs:PFLU5402)

Predicted SEED Role

"FOG: TPR repeat, SEL1 subfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K2K4 at UniProt or InterPro

Protein Sequence (184 amino acids)

>PFLU_RS26545 sel1 repeat family protein (Pseudomonas fluorescens SBW25)
MKRTGRTLVLGCLLLLQPLLAHAQAGGNSLLIPAMGRCTLNTQPDSQAESLSACQKQADG
GDAQAQYELGEYFHDSKNPARDLNKALSYFEKASLQGHAQAQFELGNMFFKGEGVPANNV
QAYIVLKMAAVNGAEDALDTADEVAEHMQRDELEVATQVLGQIFRNYLQELQSADGRSPF
SPLP