Protein Info for PFLU_RS26465 in Pseudomonas fluorescens SBW25

Annotation: DUF2076 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 248 PF09849: DUF2076" amino acids 1 to 246 (246 residues), 213.7 bits, see alignment E=2.6e-67

Best Hits

KEGG orthology group: K09945, hypothetical protein (inferred from 100% identity to pfs:PFLU5386)

Predicted SEED Role

"Uncharacterized protein conserved in bacteria"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K2I8 at UniProt or InterPro

Protein Sequence (248 amino acids)

>PFLU_RS26465 DUF2076 domain-containing protein (Pseudomonas fluorescens SBW25)
MNSEEQTLIDGLFSRLQQAETDSAPRDAQAEARIKEHMTRQPAAGYYMTQSILVQEHALK
SLDAQNKQQAQQIQQLQDELQRAKSAQPAPSSGGGFLSSIFGGGGSRDPQPAQNAPTSSG
GGWREPARPSFGQPAPQQNYQQPQQAPAAAPVGSGFLGGAMKTAAGVAGGVLLAEGISSL
FNHNSQQPQVVEEIIREEPAPASDNGNWGNDDQKFAGNDSWGSNNSDSFADSDYSDDSSS
FGDDDSFV