Protein Info for PFLU_RS24990 in Pseudomonas fluorescens SBW25

Annotation: chemotaxis protein CheA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 679 PF01627: Hpt" amino acids 8 to 92 (85 residues), 60.5 bits, see alignment E=3e-20 PF02895: H-kinase_dim" amino acids 284 to 319 (36 residues), 35.8 bits, see alignment 1.8e-12 PF02518: HATPase_c" amino acids 390 to 527 (138 residues), 62.7 bits, see alignment E=8.8e-21 PF01584: CheW" amino acids 533 to 659 (127 residues), 106.8 bits, see alignment E=1.4e-34

Best Hits

KEGG orthology group: K03407, two-component system, chemotaxis family, sensor kinase CheA [EC: 2.7.13.3] (inferred from 100% identity to pfs:PFLU5093)

Predicted SEED Role

"Signal transduction histidine kinase CheA (EC 2.7.3.-)" in subsystem Bacterial Chemotaxis or Flagellar motility or Two-component regulatory systems in Campylobacter (EC 2.7.3.-)

Isozymes

Compare fitness of predicted isozymes for: 2.7.13.3, 2.7.3.-

Use Curated BLAST to search for 2.7.13.3 or 2.7.3.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K1Q2 at UniProt or InterPro

Protein Sequence (679 amino acids)

>PFLU_RS24990 chemotaxis protein CheA (Pseudomonas fluorescens SBW25)
MSINLDQALQTFIVEARELLHAMEQSLLQLESEPGDQDAIGAIFRAAHTIKGSAGLFGLA
SIVGFTHIVEDVLDRLRDGSVAVDAALIALLLKCGDHMLELIDVVASRGEVPTPAALERG
ETLREALSAYQPLHSATADVVPAAVDDDTGAEVLWHISLRFGVDVFRNGMDPLSFLRYLD
TLGQMVQVTTLTDSIPALENWDPESCYLGFEIDLRSTASHATLNEVFDFVRDDCEVHISA
VDETPESSVALGSDLIAQAEPGPATASLQRLPANSEAKTRDGSYVRVNADKLDELINLVG
ELVIASAGASLLARSCNNDPLQEATSTVSGLVEEILDGALHLRMIPIGDTFNRFRRVVRD
VSQELGKDIELIISGAETELDKTVVEKIGDPLMHLLRNAMDHGIESADARRSAGKSSKGH
LSLNAYHDSGSIVIEIADDGAGLNRDRILEKAEERGLVASGAVLTDQEVYNLIFEAGFST
AEAVTNLSGRGVGMDVVKRNITLLRGTVDLDSRPGQGTMVRIRLPLTLAIINGFLVGIDQ
STYVIPLDMVQECIELDERQRQSSRDQGYLDLRGEVLPLVDLRDHFSHEGPAARRQNVVV
VRYAEHKAGLVVDDLHGEFQTVIKPLGKLFGALRGISGSTILGSGAVALILDVPALLNQI
VQLEARTAQAPQSPTFVAR