Protein Info for PFLU_RS24985 in Pseudomonas fluorescens SBW25

Annotation: HAMP domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 552 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details transmembrane" amino acids 191 to 213 (23 residues), see Phobius details PF12729: 4HB_MCP_1" amino acids 6 to 184 (179 residues), 101.2 bits, see alignment E=7.7e-33 PF00672: HAMP" amino acids 210 to 260 (51 residues), 46.8 bits, see alignment 4.5e-16 PF00015: MCPsignal" amino acids 326 to 467 (142 residues), 128.4 bits, see alignment E=4.1e-41

Best Hits

KEGG orthology group: K03406, methyl-accepting chemotaxis protein (inferred from 100% identity to pfs:PFLU5092)

Predicted SEED Role

"Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)" in subsystem Bacterial Chemotaxis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K1Q1 at UniProt or InterPro

Protein Sequence (552 amino acids)

>PFLU_RS24985 HAMP domain-containing protein (Pseudomonas fluorescens SBW25)
MKWFYDLKISTKLISSFLVVLALTGAMGAFAILQLGAVNQAAQDIKGNWMPSMRAAAGMR
FFAANYRLKENRHISTEIAEEKVQAEREAIEARQQFETRMQTYEQLLSNDEDRQLMLSVK
SAWDAYIASSKQVLEFSRQNEEAQARSLLRGESKGHFDEVTSRLQKMVELNDAGATAAGD
KGSVLYESSRMSIIAVLVASLLIGLGLAIFIARIISRPLRQAASAAEQLAEGNLNAHIEP
GGKDETGLVLNAMRNMVGKLAHIIGEVRNAADNLASASEQVSATAQSMSQATSEQAASVE
ETSASVEQMSASINQNTENAKVTDGMASKAAKEATEGGESVQQTVVAMKKIAQRISIIDD
IAYQTNLLALNAAIEAARAGEHGKGFAVVAAEVRKLAERSQVAAQEIGELSSSSVEMAEK
AGKLLDEMVPSINKTSDLVQEISAASEEQAAGVAQINTAMTQLNQVTQQNASSSEELAAT
AEEMSSQAEQLQQAMSFFVLDSAFKVAGQSAGADSPGSTPNRQPPRPKPTAPRKAFAYTM
ASAPDESDFTRF