Protein Info for PFLU_RS24935 in Pseudomonas fluorescens SBW25

Annotation: two pore domain potassium channel family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 263 transmembrane" amino acids 21 to 41 (21 residues), see Phobius details amino acids 47 to 63 (17 residues), see Phobius details amino acids 84 to 102 (19 residues), see Phobius details amino acids 122 to 145 (24 residues), see Phobius details amino acids 162 to 184 (23 residues), see Phobius details amino acids 196 to 217 (22 residues), see Phobius details amino acids 228 to 252 (25 residues), see Phobius details PF07885: Ion_trans_2" amino acids 173 to 248 (76 residues), 59.2 bits, see alignment E=3.1e-20

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU5082A)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K1P0 at UniProt or InterPro

Protein Sequence (263 amino acids)

>PFLU_RS24935 two pore domain potassium channel family protein (Pseudomonas fluorescens SBW25)
MNSTKESLVKAIAKSALQTAIAFPIIFGMFHFFILSIWLYWDFAPEIPLILSSLILLLCY
WRMESFVPYPLHNRNNKSTSRIQKFIELPFWYVVMVGLYVYLDHMFNFKNRLETQDIYKP
VLWGYGAFFALCIIGPLLSHSAITIIKGVVKSAQEIKNLMARVLSVFYAYMAVAIVFSAL
YRLLEHNNQKSFSASFGSWFDAIYFSFVTITTVGYGDIYPVTMPAKIMVVLEVLLGLLFL
VIMLATAISISFHESVITSPKDE