Protein Info for PFLU_RS24780 in Pseudomonas fluorescens SBW25

Annotation: ribosome biogenesis GTPase Der

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 489 TIGR03594: ribosome-associated GTPase EngA" amino acids 3 to 450 (448 residues), 573.5 bits, see alignment E=4.7e-176 TIGR00231: small GTP-binding protein domain" amino acids 4 to 157 (154 residues), 74.6 bits, see alignment E=1.2e-24 amino acids 194 to 357 (164 residues), 80.1 bits, see alignment E=2.3e-26 PF01926: MMR_HSR1" amino acids 5 to 119 (115 residues), 104.4 bits, see alignment E=1.9e-33 amino acids 196 to 314 (119 residues), 96 bits, see alignment E=7.7e-31 PF02421: FeoB_N" amino acids 5 to 127 (123 residues), 57.5 bits, see alignment E=5.9e-19 amino acids 195 to 355 (161 residues), 48.5 bits, see alignment E=3.4e-16 PF00009: GTP_EFTU" amino acids 195 to 363 (169 residues), 41.3 bits, see alignment E=6.7e-14 PF14714: KH_dom-like" amino acids 370 to 450 (81 residues), 93.6 bits, see alignment E=3.6e-30

Best Hits

Swiss-Prot: 94% identical to DER_PSEF5: GTPase Der (der) from Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5)

KEGG orthology group: K03977, GTP-binding protein (inferred from 100% identity to pfs:PFLU5053)

Predicted SEED Role

"GTP-binding protein EngA" in subsystem Universal GTPases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K1L0 at UniProt or InterPro

Protein Sequence (489 amino acids)

>PFLU_RS24780 ribosome biogenesis GTPase Der (Pseudomonas fluorescens SBW25)
MVPVIALVGRPNVGKSTLFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYIIVDTGGI
SGDEHGMDEKMAEQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYLVANKI
DNIDPEQARAEFSPMGLGDAIPVAGAHGRGITQMLEIALSTFPKDDDEEEEGEEEIVAEG
EEAKRIPGPSEKDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERN
DEKYTLIDTAGVRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGF
ALEAGRALVIAINKWDGMTPSERDFVKIELQRRLFFVEFADIHFISALHGTGVGNLYASV
QNSFKSAVTRWPTNRLTQILEDAVGEHAPPMVNNRRIKLRYAHLGGANPPIIVIHGNQIE
KVPKSYVRYLENTYRRVLKLVGTPIRIEFKGGENPYEGNKNTLTDRQVNKKRRLMTHHKK
ADKKRRDKR