Protein Info for PFLU_RS24435 in Pseudomonas fluorescens SBW25

Annotation: LTA synthase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 649 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 50 to 71 (22 residues), see Phobius details amino acids 83 to 106 (24 residues), see Phobius details amino acids 137 to 155 (19 residues), see Phobius details amino acids 175 to 193 (19 residues), see Phobius details PF00884: Sulfatase" amino acids 276 to 546 (271 residues), 172.4 bits, see alignment E=7.4e-55

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU4985)

Predicted SEED Role

"Sulfatase family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K198 at UniProt or InterPro

Protein Sequence (649 amino acids)

>PFLU_RS24435 LTA synthase family protein (Pseudomonas fluorescens SBW25)
MGLFKTAPMRYLLLVTGAWLVIFLLTRSVLLITHLDEVGGNLLPVFGVGVLYDLGFLAYA
ALPLGLYLLLCPPALWRRRGHRWFLQAVLTVSLFAMLFTSVAEWLFWDEFGVRFNFIAVD
YLVYSDEVLNNLLESYPIGKLLSLLAMLAMVLSLALRKPFNAAMSAPLPAMRGRLLNALA
LLVVTGLSLQLISQDSPRTQGGNAYKNELASNGPYQFFAAFRNNELDYPQFYKTLPTDIV
ARQLRAELSEPNARFIGQDPLDIRRAITNPGTLRKPNIVLVTIESFSAKYLGSNGDGRNL
TPNLDALRKQSLYFNNFYATGTRTDRGLEAITLAIPPTPGRSIVKRIGRESGFASLGQHL
SAIGYDSVFVYGGRGYFDNMNAFFSGNGYRVVDQSSVPESEISFKNAWGMADEDLYKQTL
KLADADYAKQQPFLLQLMTTSNHRPYTYPDGRIDIKSGNGRDGAVKYTDHAIGEFLEAAR
QKPWFDNTIFVFVADHTAGSAGKEDLPITNYQIPLFIYAPKLIDARETAQLASQIDLAPT
LLGLINLSYESTFFGRNLLQDNPLPPRVVVGNYQHLGLFDGTDLAILSPRLGLRRHDQAL
GESQELRVGSDDALIQRAITYYQAASYGFKQQLLGWRAPKDEAPVLSTR