Protein Info for PFLU_RS24230 in Pseudomonas fluorescens SBW25

Annotation: DUF4350 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 389 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 256 to 276 (21 residues), see Phobius details PF14258: DUF4350" amino acids 44 to 235 (192 residues), 83.9 bits, see alignment E=8.8e-28

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU4944)

Predicted SEED Role

"FIG00955538: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K157 at UniProt or InterPro

Protein Sequence (389 amino acids)

>PFLU_RS24230 DUF4350 domain-containing protein (Pseudomonas fluorescens SBW25)
MNRALLWVGLLLACLLGAGGYYAWSKAIPYDEVVDRGPSPEALANPYLAAEHFLRQQGLT
VEQANSLERLTTLPAKGNSLLLLGERSNMSPRQVEQLLGWAKSGGHLLLVAEALWDEETG
KSGDLLLDRLPIHQTLSDEPDEFAPTREKPPKKKAPDLTKLYVDNETAPAYFSFDTDFNL
TDPKHLAQFSANSAKSTHLMQLQLGEGSVTVITDSDLWKTPDIGKHDNAWLLWYLNQGTA
VTLLFNSDFDDLFTLLLRYFPQALVALIALVALALWRAGMRHGPIRPPASNARRQLQEHL
KASADFLLRRSGHGTLLHALQRDILRTARRRHPGFEHLDNAEQWRVLEHLTRQPSHVISQ
ALGPLPAKRLSSADFSRQVACLQTLRNAL