Protein Info for PFLU_RS24225 in Pseudomonas fluorescens SBW25

Annotation: DUF4129 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 509 transmembrane" amino acids 32 to 66 (35 residues), see Phobius details amino acids 151 to 175 (25 residues), see Phobius details amino acids 205 to 228 (24 residues), see Phobius details amino acids 249 to 268 (20 residues), see Phobius details amino acids 348 to 370 (23 residues), see Phobius details PF13559: DUF4129" amino acids 429 to 500 (72 residues), 30 bits, see alignment E=2.3e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU4943)

Predicted SEED Role

"5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K156 at UniProt or InterPro

Protein Sequence (509 amino acids)

>PFLU_RS24225 DUF4129 domain-containing protein (Pseudomonas fluorescens SBW25)
MRLSDASVVIRPRTAWEAMDLGVLMAREHRLLLMSSWALITLPVFALLTALLWQYPSTAI
FLFWWLKPAFDRLPLYILSKALFGETPSLKQAVRQWPSLLKSQLLASLTWRRLSLSRSFL
MPVSQLEGLDGPARQKRLGVLQQRNAGAARWLTTVGVHLEIGLWFGCMALFYFFIPQNIE
TDWDWQRLALATSAEGLWLEHLGNAFYALILVFWEPIYVACGFSLYLNRRTALEAWDLEL
VFRRLRQRLSSVVPLLLLMIGLTLLPFSPPVLADPSSPPKPLSTQSASQSVKVILDKPPF
KNPETVTRYRFGEEQPATKNKAHSDGRLPAWLKALLDNLNSNTFKHIAQGLEVLLWGLLI
GSLILLAWRYREWLRTFVTRRGPRKPKTVAPLPTQLFGLELGAETLPDDVASAAEQLWAT
HPREALGLLYRGLLSRLLHDFSLPLKSADTEGQVLARVNQLQQPQLLAFSDELTRHWQNL
AYGHRLPPLTVQQKLCSDWRTLFSSGIQP