Protein Info for PFLU_RS24190 in Pseudomonas fluorescens SBW25

Annotation: DUF853 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 492 PF05872: HerA_C" amino acids 8 to 491 (484 residues), 703.6 bits, see alignment E=1.5e-215 PF01935: DUF87" amino acids 23 to 244 (222 residues), 24.4 bits, see alignment E=2.8e-09

Best Hits

KEGG orthology group: K06915, (no description) (inferred from 100% identity to pfs:PFLU4935)

Predicted SEED Role

"ATPase component BioM of energizing module of biotin ECF transporter" in subsystem Biotin biosynthesis or ECF class transporters

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3JYV2 at UniProt or InterPro

Protein Sequence (492 amino acids)

>PFLU_RS24190 DUF853 family protein (Pseudomonas fluorescens SBW25)
MPDSTQLLIGADLSGQPIAQAMRLANRHGLIAGATGTGKTVTLQRLAEAFSDAGVAVFAA
DIKGDLCGLGAAANPQGKVAERIAGMPFLNYTAKAYPVTLWDIHGQSGHPLRTTISEMGP
LLLGSLLELTDSQQSALYAAFKVADREGLLLLDLKDLKALLNHLRYHPELLGEDAALMTT
GSSQALLRRLAVLEQQGAEALFGEPALQLEDILQPTGDGRGRIHLLDASRLVHEAPKVYA
TFLLWLLAELFEQLPERGDADKPLLALFFDEAHLLFADTPKALQDRLEQVVRLIRSKGVG
VYFVTQSPGDLPDSVLAQLGLRIQHGLRAFTTKEQKSLRAVAEGFRPNPAFDALSVLTEL
GTGEALVGTLQEKGTPEVVQRVLVAPPQSRIGPLSDAERAALVARSPLQGRYDKPIDRES
AYEVLMSRKELGPTEDAKSASDEPSFTDKAGAFLGTTAGKALKSAMQQAANQMGRQLVRG
LLGSLLGGSKRK