Protein Info for PFLU_RS22995 in Pseudomonas fluorescens SBW25

Annotation: GntR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 237 PF00392: GntR" amino acids 10 to 72 (63 residues), 54 bits, see alignment E=1.1e-18 PF07702: UTRA" amino acids 125 to 226 (102 residues), 47.1 bits, see alignment E=2.3e-16

Best Hits

KEGG orthology group: K03710, GntR family transcriptional regulator (inferred from 100% identity to pfs:PFLU4693)

Predicted SEED Role

"Transcriptional regulator, GntR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K0M2 at UniProt or InterPro

Protein Sequence (237 amino acids)

>PFLU_RS22995 GntR family transcriptional regulator (Pseudomonas fluorescens SBW25)
MIRHVRFDKKKRVVDELIRRIEGGVMADGVLLPGEHQLAEEFAVSRGTLREALAELKRRN
YIATQSGVGSIVTFDGMVLDQRSGWAQALADTGARVNTDILRLEAVTRPDLFSRFGSDQF
IALDRRRRTTDGTAVSLERSLMPASGGLESLPRVGLIDDSLTITLAAYGYVGAEGDQWIG
AEPLSDEDAELLGRPAGTVFLKASRTTYDRRERFMEYVESLLDPLHFRLHLQFGHSK