Protein Info for PFLU_RS21515 in Pseudomonas fluorescens SBW25

Annotation: non-ribosomal peptide synthetase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 500 1000 1500 2000 2500 3000 3500 4000 4296 transmembrane" amino acids 77 to 96 (20 residues), see Phobius details amino acids 217 to 240 (24 residues), see Phobius details amino acids 1951 to 1969 (19 residues), see Phobius details PF00501: AMP-binding" amino acids 15 to 405 (391 residues), 234.6 bits, see alignment E=3.6e-73 amino acids 1128 to 1469 (342 residues), 319.4 bits, see alignment E=6.1e-99 amino acids 2173 to 2526 (354 residues), 273.9 bits, see alignment E=3.9e-85 amino acids 3695 to 4042 (348 residues), 238.9 bits, see alignment E=1.8e-74 PF00550: PP-binding" amino acids 581 to 642 (62 residues), 57.9 bits, see alignment (E = 2e-19) amino acids 1620 to 1682 (63 residues), 52.1 bits, see alignment (E = 1.3e-17) amino acids 2686 to 2746 (61 residues), 56.4 bits, see alignment (E = 5.8e-19) amino acids 4207 to 4270 (64 residues), 64.5 bits, see alignment (E = 1.8e-21) PF00668: Condensation" amino acids 664 to 1107 (444 residues), 375.2 bits, see alignment E=9e-116 amino acids 1707 to 2152 (446 residues), 352.8 bits, see alignment E=5.6e-109 amino acids 2766 to 3197 (432 residues), 252.5 bits, see alignment E=1.5e-78 amino acids 3224 to 3674 (451 residues), 303.7 bits, see alignment E=4.5e-94 TIGR01733: amino acid adenylation domain" amino acids 1143 to 1543 (401 residues), 443.5 bits, see alignment E=2.1e-136 amino acids 2194 to 2600 (407 residues), 416.2 bits, see alignment E=3.8e-128 amino acids 3716 to 4117 (402 residues), 404.9 bits, see alignment E=1e-124 PF13193: AMP-binding_C" amino acids 2584 to 2658 (75 residues), 48.9 bits, see alignment (E = 2.1e-16) amino acids 4101 to 4178 (78 residues), 35.2 bits, see alignment (E = 4e-12) TIGR01720: non-ribosomal peptide synthase domain TIGR01720" amino acids 3063 to 3216 (154 residues), 146.3 bits, see alignment (E = 2.1e-46)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K0F1 at UniProt or InterPro

Protein Sequence (4296 amino acids)

>PFLU_RS21515 non-ribosomal peptide synthetase (Pseudomonas fluorescens SBW25)
MMDAFELPQTLVHSLQRRAAQTPDQVALRFLAESAEHSVVLSYRDLDLRARTIAAALQSN
VDLGDRAVLLFPSGPDYVAAFFGCLYAGVIAVPAYPPESTRRHHQERLLSIISDAEPRLL
LTIASLADGLAQIENAPPVLSVDSLESADNWIAPDLQPDDIAFLQYTSGSTALPKGVQVS
HGNLVANEVLIRRGFGIDLNPDDVIVSWLPLYHDMGLIGGLLQPIFSGVPCVLMSPAYFL
GRPLRWLEAISEYGGTISGGPDFAYRLCSERVSDSALERLDLSQWRVAYSGSEPIRLDTL
ERFAEKFATCGFTPNNFFASYGLAEATLFVAGGTRGHGIPALRVDEQALAANRAEPGQGS
AIMSCGTHQPEHAVLIADPQTLTELPDNRVGELWASGPSIAHGYWRNPEATAKTFVQHAG
RTWLRTGDLGFIRDGEVYITGRLKDLLIVRGHNLYPQDIEQTIEREVEVVRKGRVAAFAV
NDQGLEGIGIAAEISRSVQKILPPEALIKAIRQTVAEAYQEAPSVVVLLNPGALPKTSSG
KVQRAACALRHADGSLDSYAQFPDLHVQVSDAALGCELQNQIAAIWCEQLHVATVAADDH
FFLLGGNSITATQVVARLRETLGLELNLRMLFEAPTLEGFAANVAQLQQDGGVAQGAIQP
LSRQEDLPQSLAQNRLWITWQLDPHSSAYTIPGALRLRGELDEDAVRLSFQHLVQRHEAL
RTRFYERDGQAFQRVEAKADFELQVIDLSDLPTDEREARAQQIREDEARTQFDLEKGPLL
WVTLVRLDDEDHQLLVTLHHIIADGWSLNILIDEFSRLYAAAAQGQTLELPPLALQYADY
GSWQRQWLAEGEGQRQLAYWKAQLGEEHPTLSLATDHPRSAHHRHTASRHTVRLGVSLSE
AIRQTAQAHESTPFMLLLAAFQSLLYRYSGQRNIRIGVPNANRPRQETQGLVGFFINTQV
MRAELDGRLPFSELLAATRQTALGAQAHQDLPFEQLLEAFPQAREQGLFQVMFNHQQRDL
SALRRLPGMLADELPWHSRDAKFDLQLHSEEDRNGRLSLSFDYADELFDSATVQRLAEHF
INLLQAACDQPQQAIGDLKLMQEDEQQPWSEAPCTPAQQWLPELLNRHTSDNIALVWQGG
SLTFAQLHTQANRLAHYLRDKGVGPDVCVAIAAERSPHLLIGLLAIIKAGGAYVPLDPDY
PAERLAYMLKDSGVHLLLTQTALLEQVPSADGVCVIAMDSLHLDSWPTQPPGLHLHGDNL
AYVIYTSGSTGQPKGVGNTHAALAERLQWMQATYQLNDTDVLLQKAPISFDVSVWECFWP
LITGCRLVLAGPGEHRDPHRIAQLVQAHGVTTLHFVPPLLQLFIDEPRVTECTSLRRLFS
GGEALPAELRNRVLAQLPAVQLHNRYGPTETAINVTHWHCRAEDGERSPIGRPLGNVICR
VLDEQLNPVPLGVPGELCIGGIGLARGYLGRAGLTAERFVADPYGEAGARLYRTGDRARF
NAEGVIEYLGRLDQQVKLRGFRVEPEEIEARMLALEGIAQAVVLVRDAQLIGYYTALAQL
DEHHVKSALAAELPEYMVPALLMRLDAMPLSPSGKLDRRALPEPVWHVREHVEPETPLQQ
QIAAIWREVLGLPSIGLRDDFFALGGHSLLATQIISRTRQACDVELPLRTLFEASELGAF
AEQVGLIQASGQRNQQTAIAKVDRSQPVPLSYSQQRMWFLWQMEPDSPAYNVGGMARLRG
VLDVGRFEAALQALIMRHETLRTTFPSVDGVACQKVSAQTGLRMDWQDFSALDEAERQSR
LQQLADHEAHTPFNLETGPLLRACLVKAAEREHYLVLTLHHIVTEGWAMDIFARELSALY
EAFIDERLSPLAPLPVQYLDYSVWQRQWMEAGERQRQLDYWTQQLGTEHPLLELPGDRPR
PPVQSHRGELYRFDLSDDLAARVRAFNAERGLTLFMTMTATLAVLLYRYSGQTDLRIGAP
VANRIRPESEGLIGAFLNTQVLRCQLSGQMNVAELFEQVRHTVIEGQSHQDLPFDHLVEA
LQPPRSAAYNPLFQVMCNVQRWEFQQSRQLAGMTVEYLANDARATKFDLNLEVTDLDHRL
GCCLTYSTDLFDEPRIARMAEHWRNLLEALIANPQQRLSELPLLTAAEQRALQDSLGIEA
GEHRLDQCIHQLFSQQAAARGDAPALTFAGETLSYRELDARANRLAWMLRERGVGPQVRV
GLALPRSLEMVIGLLAILKAGGAYVPLDPEYPLDRLHYMIEDGGVGLLLSDAAMFEALGE
LPASVACWCLEDDLPVLANYPADEPPFISLPQHQAYLIYTSGSTGKPKGVVVSHGEIAMH
CAAVIERFGMRPDDCELHFYSINFDAATERLLVPLLSGAQVVLRAQGQWDAEEICALIRT
HRINILGFTPSYGSQLAQWLATQQQTLPVRMCITGGEALTGEHLQRIRAAFQPQVFFNAY
GPTETVVMPLASLAPEQLEEGAASVPIGSIIGDRVAYILDADLALVPQGATGELYVGGAG
LAQGYHQRPGMTAERFVADPFAHNGGRLYRTGDLVRQRADGLVEYLGRIDHQVKIRGFRI
ELGEIETRLLEHAAVREAVVLALDAPSGKQLVAYLVSDAEHGALRDALKAHLKAQLPDYM
VPAHLIVLDSMPLTANGKLDRRALPQPDPEANRQQYVAPRNELESTLAAIWCAVLNVQQV
GLDDNFFELGGDSILSIQVVSRARQAGIHFSPRDLFQHQTVQTLAAVATRSEQVTAEQGV
LTGTSGLTPIQHWFFDTDIPQRQHWNQALVLKPLQLLVPHRLEQALLAVLEHHDALRLSF
SQRDAHWHAEHLAVPQGGVLMQAQVRDMAQCTALFTDTQRSLDLQHGPLLRALLVDGPEG
QQRLLVAIHHLVVDGVSWRVLLEDLQTVYRQLSDGQSVSLPAKTSALREWAARLQAYAGS
ESLREELSVWQAQLAGPDVALPVARPQGSLRNRDADTVSVRLDAEHTRQLLQQAPSAYRT
QVNDLLLTALARVLCRWSGHASALIQLEGHGRESLFDDIDLTRSVGWFTSAYPLRLTPHA
AQGDSIKAIKEQLRSVPHKGLGYGVLRYLADDLCQQSMAVLPSAQITFNYLGQFDQSFGA
DALFHPLDESAGLAHDPDAPLPNELSVDSQVYGGELVLRWTLSRERFDHATVRELAEAYL
AELHSLTQHCLQDDAGGLTPSDFPLAHLSQVQLDSLPVPATVIEDVYPLTPMQEGLLLHT
LLEPGTGLYYMQDRYRINSALDPERFAQAWQAVIARHEALRASFCWNVGEDMLQVIHKPG
STPIEYLDWSADPESEQEPRLQALLKQEREVGFDLLNQAPFHLRLIRVGAERYWFMMSNH
HILIDAWCRSLLMNDFFEIYMALGEGREAQLATPPRYRDYIAWLQRQNLNEARQWWQQNL
QGFERTTPIPSDRPFLREHAGHSGGMVVGDCYTRLDACDGAQLRELAQAHQLTVNTFAQA
AWALVLRRLSGDRDVLFGVTVAGRPVEMPEMQRTVGLFINSIALRVKLPEDDQPCSVRQW
LSGLLDSNMQLREYEYLPLVTIQEHSELPKGQPLFDSLFVFENAPVEVSVLDRAHSLNAT
SDSGRTHTNFPLTAVCYPGDDLGLHLSYDQRYFDETTVQGMLGEFKRLLLALVQGFHGDM
ADLPLIGEQEREFLVDGCNQSEHDYPLERSYIELFEEQVAAHPQRIAASCLDQQWTYDEL
NRRSNGLGHALIAAGVGLDQPVALLAERNLDLLGMIIGSFKAGAGYLPLDPGLPSRRLRS
IIDLSRTPLLVCTEACREQAIELLDGFDCQLLVWEEIPARGENPGIYSGPDNLAYVIYTS
GSTGLPKGVMVEQRGMLNNQLSKVPYLALSDADVIAQTASQSFDISVWQFLAAPLFGARV
DVVPNTLAHDPQGLLEHVQAQGITVLESVPSLIQGMLAQDRISLDGLRWMLPTGEAMPPE
LAHQWLLRYPQIGLVNAYGPAECSDDVAFYRVDLASTRGTYLPIGTPTDNNRLYLLDGAL
ELVPQGAVGELCVAGTGVGRGYVSDPLRTAPVFVPNPFGAPGERLYRTGDLARRRSDGVL
EYVGRVDHQVKIRGYRIELGEIEARLHEQPEVRDAAVGVQEGVNGKHLVGYLVAADAALN
PGERLDRIKQRLRAELPEYMVPLHWLWLDRLPLNANGKLDRKALPALEIGQLHSQDYLAP
RNELETTLAAIWAEVLKVDRVGVQDNFFELGGHSLLATQIASRVQKTLQRDVPLRAMFEC
STVAELAEYIEGLAANEISAEKVDRLSDLMAELEGF