Protein Info for PFLU_RS21325 in Pseudomonas fluorescens SBW25

Annotation: DDE-type integrase/transposase/recombinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 382 PF13518: HTH_28" amino acids 11 to 61 (51 residues), 31.1 bits, see alignment 7.1e-11 PF13011: LZ_Tnp_IS481" amino acids 12 to 76 (65 residues), 28.6 bits, see alignment E=5.8e-10 PF13551: HTH_29" amino acids 13 to 72 (60 residues), 34.2 bits, see alignment E=7.7e-12 PF13384: HTH_23" amino acids 15 to 49 (35 residues), 24.7 bits, see alignment 5.8e-09 PF13565: HTH_32" amino acids 39 to 114 (76 residues), 38.5 bits, see alignment E=4.8e-13 PF00665: rve" amino acids 140 to 244 (105 residues), 39.2 bits, see alignment E=2.5e-13 PF13683: rve_3" amino acids 233 to 295 (63 residues), 46 bits, see alignment E=1.2e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU5832)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (382 amino acids)

>PFLU_RS21325 DDE-type integrase/transposase/recombinase (Pseudomonas fluorescens SBW25)
MPWNQESPMNQRIKLVADWLSGNFTKSQLARRFGVSRPTVDKWISRHNGDLKSLAEVSRR
PHNSPNKTDDEILARVVAMKEAHDKWGPKKLIELLRIEDPSIDWPSPSTAGQWLDRLGLV
NKRRFKRRHGTSHIEMREANDPNKTWCADYKGQFKMLNAQMCFPLTVTDHASRLILACRA
HPKIKTQPVKQTFERLFQEYGMPEVIRSDNGVPFASPGLARMSTLAVWWIRLGIYPERTM
PGRPAQNGRHERMHRSLKLELPLGSNLVEQQLLLEHFKHEFNYVRPHEALGMKRPGDVYM
PSTRLYPGCLPDVEYPAEMRVRSVRQDGSIKWNGKLVFVSEALSGERIGLKEAEDDVWDL
YLCDYPLGRLGRGMTRVQASNV