Protein Info for PFLU_RS21235 in Pseudomonas fluorescens SBW25

Annotation: LTA synthase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 695 transmembrane" amino acids 25 to 49 (25 residues), see Phobius details amino acids 74 to 95 (22 residues), see Phobius details amino acids 100 to 120 (21 residues), see Phobius details amino acids 148 to 172 (25 residues), see Phobius details amino acids 198 to 218 (21 residues), see Phobius details PF00884: Sulfatase" amino acids 313 to 591 (279 residues), 198.7 bits, see alignment E=7e-63

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU4327)

Predicted SEED Role

"Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K075 at UniProt or InterPro

Protein Sequence (695 amino acids)

>PFLU_RS21235 LTA synthase family protein (Pseudomonas fluorescens SBW25)
MANPDALSQQRASNRLLQPTVKSHLAYTLLCALVMMVMFSLLRLALLVYNREMILDTPAS
TFLEAFANGLRLDLRLVVYLIIPLLLALFSVRAMAARGFFRFWLTVASSIALFLGLMEMD
FYREFHQRLNGLVFQYVKEDPKTVMSMLWYGFPVVRYLLAWAVGTLILSMAFKGADRATR
PRGPFSGGSIGTRQVAPWYSRIAVFVVCLLIAVVAARGTLRQGPPLRWGDVYTTDSNFAN
QLGLNGTLSLIGAAKARFSEHRDNTWKATLEQPLATQTVRDMLVLPTEKLVDTDTAAVRR
EFTPPAEKTLPIKNVVVILMESFAGHSVGALGRPGNITPYFDKLSKEGLLFDRFFSNGTH
THQGMFATMACFPNLPAFEYLMQTPEGSHKLSGLPQLLSARKFDDVYVYNGDFAWDNQSG
FFSNQGMTNFIGRNDFVDPVFSDPTWGVSDQDMFNRGLEELKAREGGKPFYALLQTLSNH
TPYALPTPLPVDKVTGRGSLDEHLTAMRYSDWALGQFFEKARKEPYFKETLFVIVGDHGF
GNEQQITEMDLGRFNVPMLMIAPGMQEKFGERNHTVGTQIDIVPTIMGRLGGETLHQCWG
RDLLNLPEGDKGFGVIKPSGSDQTVALLTGDRVLVLPKEMPPKLWEYELGANPTGKVIAE
SPDEAALRQKLESFLQTATKSLLDNTAGVIDGKPD