Protein Info for PFLU_RS20855 in Pseudomonas fluorescens SBW25

Annotation: LysE family translocator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 202 transmembrane" amino acids 6 to 28 (23 residues), see Phobius details amino acids 40 to 65 (26 residues), see Phobius details amino acids 71 to 91 (21 residues), see Phobius details amino acids 115 to 137 (23 residues), see Phobius details amino acids 143 to 165 (23 residues), see Phobius details amino acids 183 to 201 (19 residues), see Phobius details PF01810: LysE" amino acids 17 to 198 (182 residues), 109.8 bits, see alignment E=6.3e-36

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU4246)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3JZY7 at UniProt or InterPro

Protein Sequence (202 amino acids)

>PFLU_RS20855 LysE family translocator (Pseudomonas fluorescens SBW25)
MPFETWLLYLFTCCGISVVPGPNALLVLTHGALHGSRRTLFTISGGVLGFALVLALCALG
LGALIQASASAFTALKIAGGLYLIWLGYGLWRAAPVSLETAATTSLRRWSLFRQGLVSAL
SNPKALLLFTAVIPPFLDPHRNIITQTAIIALTYAVVEFVVEYLVASAAHRVRPWLARTG
RRFNKVCGGFFVLFGVALPLHS