Protein Info for PFLU_RS20795 in Pseudomonas fluorescens SBW25

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 504 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 45 to 62 (18 residues), see Phobius details amino acids 73 to 92 (20 residues), see Phobius details amino acids 98 to 120 (23 residues), see Phobius details amino acids 132 to 154 (23 residues), see Phobius details amino acids 162 to 182 (21 residues), see Phobius details amino acids 194 to 213 (20 residues), see Phobius details amino acids 220 to 242 (23 residues), see Phobius details amino acids 261 to 282 (22 residues), see Phobius details amino acids 293 to 314 (22 residues), see Phobius details amino acids 325 to 346 (22 residues), see Phobius details amino acids 352 to 370 (19 residues), see Phobius details amino acids 396 to 417 (22 residues), see Phobius details amino acids 470 to 491 (22 residues), see Phobius details PF07690: MFS_1" amino acids 14 to 403 (390 residues), 178 bits, see alignment E=1.3e-56

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU4234)

Predicted SEED Role

"Multidrug resistance protein B"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3JZX5 at UniProt or InterPro

Protein Sequence (504 amino acids)

>PFLU_RS20795 MFS transporter (Pseudomonas fluorescens SBW25)
MRKEAAILVVASAGCAMTVLDTNVVGIVLPTIARDLQASFAEVEWVISTYVLCFAALLLP
AGSIADRYGRRRVFLFGIALFAVSSLACGLAPSASGLYLARAVQGVGAAFLLAPALAIIG
HTFHDEKARSHAWAIWGGIMGLTMVVSPLIGGVISSSLGWRWAFYINIPVCLLLAAAVVT
LVDESRDPIPRTLDIPGIALFALGMFSATWALIAGPSHGWSSIPVLVSMIGGLLFFAVFV
WVEKRRTHPMLDLELFTARPFVGAVLAMLAYASSAQVMASLLPLFLQNGRGNGVLQAGIA
MLPFAIAMLIFPQVGRRLSPYLDSAGILALGLLIVALGNLILMFSAIQQGELLLISGMAI
LGTGGGLLNGETQKAIMGTVPRSRAGMASGISTTSRFTGILLGFAGLGAVLASGVKLAIE
SRLIDAGVSAKPGFSEYVMAGDFARAIAMYPHDLTKTLNGLAQQSYSQGFAGAFVIAAVF
SLLASGAVYVLMRSKKSHSPSPAI