Protein Info for PFLU_RS20455 in Pseudomonas fluorescens SBW25

Annotation: DUF979 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 316 transmembrane" amino acids 6 to 25 (20 residues), see Phobius details amino acids 32 to 49 (18 residues), see Phobius details amino acids 55 to 75 (21 residues), see Phobius details amino acids 97 to 115 (19 residues), see Phobius details amino acids 132 to 150 (19 residues), see Phobius details amino acids 169 to 187 (19 residues), see Phobius details amino acids 207 to 227 (21 residues), see Phobius details amino acids 229 to 252 (24 residues), see Phobius details amino acids 254 to 277 (24 residues), see Phobius details amino acids 294 to 315 (22 residues), see Phobius details PF06166: DUF979" amino acids 7 to 316 (310 residues), 408 bits, see alignment E=1.3e-126

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU4175)

Predicted SEED Role

"FIG001614: Membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3JZR4 at UniProt or InterPro

Protein Sequence (316 amino acids)

>PFLU_RS20455 DUF979 domain-containing protein (Pseudomonas fluorescens SBW25)
MIISIQYLYWLAGVLLLITAGMILLDRTHPKRWSTALFWLLFAIPFLVGERLPSVVIGAG
VVVMALIAGLGGVGRGTHVELHDKASRASAGRLGHKLFIPALAIPLTTVIGSVVLKHTEI
GGVPLLDPKNTTFVSLGIGCLIALGLACWLTRDTPVQALRESRRLTEALGWAMVLPQMLA
MLGLLFNEAGVGTAVAHVTTTYINLDFKLVAVMVYVLGMALFTVIMGNGFAAFPVMTGGV
GVPVLVGIYGGNPAVMAAIGMFSGYCGTLMTPMAANFNIVPAALLELPDKNAVIKAQLPT
ALMMLVVNIVLLYLLM