Protein Info for PFLU_RS19630 in Pseudomonas fluorescens SBW25

Annotation: amino acid ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 233 transmembrane" amino acids 28 to 49 (22 residues), see Phobius details amino acids 69 to 87 (19 residues), see Phobius details amino acids 101 to 117 (17 residues), see Phobius details amino acids 166 to 186 (21 residues), see Phobius details amino acids 202 to 224 (23 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 18 to 122 (105 residues), 63 bits, see alignment E=1.6e-21 PF00528: BPD_transp_1" amino acids 49 to 228 (180 residues), 67.8 bits, see alignment E=5.3e-23

Best Hits

KEGG orthology group: K10040, putative glutamine transport system permease protein (inferred from 100% identity to pfs:PFLU4018)

Predicted SEED Role

"Glutamate Aspartate transport system permease protein GltJ (TC 3.A.1.3.4)" (TC 3.A.1.3.4)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3JZ13 at UniProt or InterPro

Protein Sequence (233 amino acids)

>PFLU_RS19630 amino acid ABC transporter permease (Pseudomonas fluorescens SBW25)
MKQDFDLAAILQGEYAELIVKGIEMTLQLALFAWLLAMVLALTLVTVRLTGNKLADRLVA
GYVSYHRNVPTLVQLMLWYFGVPTLLSESAQLWLANHNTEYLFSVIALGLCQAAYFCEDI
RSGLRAIPAGQTEASRALGLGYVRSMRYVILPQGVRNCLPSLINHTVLLFKNTSLAMAIG
VVELTYASREVENYTFRTFESYLVATVFYLVFSLLLMGAGALLARHFSKALAR