Protein Info for PFLU_RS19435 in Pseudomonas fluorescens SBW25

Annotation: efflux transporter outer membrane subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 467 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details TIGR01845: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family" amino acids 11 to 461 (451 residues), 339.5 bits, see alignment E=1.6e-105 PF02321: OEP" amino acids 59 to 253 (195 residues), 71.7 bits, see alignment E=3.5e-24 amino acids 279 to 459 (181 residues), 86.1 bits, see alignment E=1.4e-28

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU3979)

Predicted SEED Role

"Outer membrane pyoverdine eflux protein" in subsystem Siderophore Pyoverdine

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3JYX4 at UniProt or InterPro

Protein Sequence (467 amino acids)

>PFLU_RS19435 efflux transporter outer membrane subunit (Pseudomonas fluorescens SBW25)
MNKRSLCMPGLCVLLSACAGHPPALDSGIAAPASWQYAERDAAQATNQHWWTQFGSAQLN
RLVEQARRDSFDVAAATARVRQAQASAVIAGAPLLPEVKFNLATSHQKLLRGQGGPDLDV
SQSDDAVDNFGANLTASYEVDFWGGRAAARDSALHSLRASEFDQATVELTLLSSVADRYA
QTLAAHQREQIAALNLANARNVLDLVQTRYDAGSATALELAQQKSLVASQQRQLPLIQQL
AEESRITLAALLGQPVQALNLRAEPFQALTWPTIGAGMPSQLLSRRPDIAKAEAQLAAAQ
ADVTVARAAMLPAVTLGATLGSDAYKAMDILRSPYYTLTAGLVGPIFNNGRLSAERDKAR
ARQDELLHTYRGAIINGFADVEKALSSITRLDQQRQWQSEELQQAQSAFQIAESRYQAGA
EDLLTVLETQRTLYAAQDQNVQLRLARLQASIALYKALGGGWQTEIR