Protein Info for PFLU_RS19105 in Pseudomonas fluorescens SBW25

Annotation: AraC family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 342 PF12625: Arabinose_bd" amino acids 25 to 207 (183 residues), 129 bits, see alignment E=3.6e-41 PF12833: HTH_18" amino acids 259 to 336 (78 residues), 56.6 bits, see alignment E=3.9e-19 PF00165: HTH_AraC" amino acids 297 to 336 (40 residues), 29 bits, see alignment 1.3e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU3917)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3JYI8 at UniProt or InterPro

Protein Sequence (342 amino acids)

>PFLU_RS19105 AraC family transcriptional regulator (Pseudomonas fluorescens SBW25)
MKPVRLGDLSVGFVHTLADAIHSHGLDPQPLLLQYGLDPARLAEAGARLSIPRYMRLGHA
AIQLTGDPGLGLRMGQLSRLSQAGLAGVTAAQAPNVREAARALTRFEALYGSNYRGQSSF
VEDAEGAWLRFYSISPYNAYNRFVVDSIIAGWLHQLSSLAQQPVQAQRIDIEFEAPAYSE
HYNALGDVHFGADANQLRLNQHTLALRNPQHCPSTWQLLLQLCERELEQLTRTRSLRERI
TRLLGPMLNGGREPDLEEVAARLKLPTWTLRRKLAEEGTQFRAILNDTRRDLAMTYIRDT
ELAFGEIAYLLGFASAQAFQRAFRRWNNQTPGEFRRSQRHSA