Protein Info for PFLU_RS18995 in Pseudomonas fluorescens SBW25

Annotation: carboxypeptidase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 383 PF18027: Pepdidase_M14_N" amino acids 10 to 117 (108 residues), 119.3 bits, see alignment E=8.4e-39 PF00246: Peptidase_M14" amino acids 138 to 304 (167 residues), 69.9 bits, see alignment E=2.9e-23

Best Hits

Swiss-Prot: 47% identical to Y1242_ZYMMO: Uncharacterized protein ZMO1242 (ZMO1242) from Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU3895)

Predicted SEED Role

"Predicted carboxypeptidase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3JYG6 at UniProt or InterPro

Protein Sequence (383 amino acids)

>PFLU_RS18995 carboxypeptidase family protein (Pseudomonas fluorescens SBW25)
MTVALTSIKISTDFDSGNIQVLDAHDAYQLLLAIKPDTRSPHFQWFHFKAEGMHVGHTHT
FRLSNASKSSYPHAWSGYNAVASYDHINWFRVPSRFDGEILHISLETREKHAWFAYFEPY
SRERHDALIDKALSRAGTKLLATGKSVEGRDIQLLRRGKGGEGRRKIWIIAQQHPGEHMA
EWFMEGIIERLQQDGDAELKKLLKVADLYLVPNMNPDGAFHGHLRTNAMGQDLNRAWQSA
SQEISPEVLFVQQQMETYGVDLFLDIHGDEEIPYVFTAGCEGNPGYTPRIEALEKHFRGH
LSALTRDFQTTYGYTRDLPGEANMTLACNAVGQQYDCLSLTLEMPFKDNDDAPDLHTGWS
GKRSMQLGKDVLSTVADIVDVLR