Protein Info for PFLU_RS18825 in Pseudomonas fluorescens SBW25

Annotation: SfnB family sulfur acquisition oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 398 TIGR04022: sulfur acquisition oxidoreductase, SfnB family" amino acids 9 to 398 (390 residues), 606.2 bits, see alignment E=1.2e-186 PF02771: Acyl-CoA_dh_N" amino acids 27 to 121 (95 residues), 57.6 bits, see alignment E=2.4e-19 PF08028: Acyl-CoA_dh_2" amino acids 242 to 373 (132 residues), 53 bits, see alignment E=6.8e-18

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU3860)

Predicted SEED Role

"Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3JYC3 at UniProt or InterPro

Protein Sequence (398 amino acids)

>PFLU_RS18825 SfnB family sulfur acquisition oxidoreductase (Pseudomonas fluorescens SBW25)
MSAHPQHPAHIIRSDAEAIEVATRLAARFAVDASARDRDRILPFAELEAFSASGLWGITI
PKEYGGAGVSYVTVAEVIKLISAADPSLGQIPQNHLGVVDILLQTATEAQKRHYFGKVLA
GYRFGNAFSEAKSKNAGTFDTQIRVHGDTAYINGEKFYCTGALFAHIVPTVGNNEHGQAF
IAFVERDAPGLSVIDSWDGFGQRTTASGGVTLDGVTVPLTAVIPAHQAFDQPTANGPISQ
IIQAAVDTGIALGALEQAKIYARQARPWIDSQQEHGWQDPFTIAAIGDLEWRVHGTEAIL
AKAGLAVDRALAEPSEDTVAHASLVVAQAKVLSAETALLASSKLFELAGTRSVTGKHNLD
RFWRNARTHTLHDPARWKYHLIGNFVLNGVKPARHAWN