Protein Info for PFLU_RS18760 in Pseudomonas fluorescens SBW25

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

Best Hits

Swiss-Prot: 51% identical to YKNY_BACSU: Uncharacterized ABC transporter ATP-binding protein YknY (yknY) from Bacillus subtilis (strain 168)

KEGG orthology group: K02003, (no description) (inferred from 100% identity to pfs:PFLU3847)

MetaCyc: 37% identical to L-arginine ABC transporter ATP binding subunit (Escherichia coli K-12 substr. MG1655)
ABC-4-RXN [EC: 7.4.2.1]

Predicted SEED Role

"ABC transporter ATP-binding protein"

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3JYB0 at UniProt or InterPro

Protein Sequence (234 amino acids)

>PFLU_RS18760 ABC transporter ATP-binding protein (Pseudomonas fluorescens SBW25)
MTDTPAHPGLISLQGIGKHYQLAGQHLSILNDVCLCIARGDSCGILGASGSGKSTLLNIL
GLLDLPNGGQYHFAGHDIFNATPDQLAAIRNQQIGFVFQSFNLLPRLSALDNVALPLSYR
GVSRQESVEQALRMLEQVGLADRAHHRPADLSGGQRQRVAIARALVGKPSVILADEPTGN
LDSTTAQDIMDLLLALNREQQVTLIIVTHDPHIAERLERKILVRNGVVQEVGRL