Protein Info for PFLU_RS18085 in Pseudomonas fluorescens SBW25

Annotation: helix-turn-helix transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 920 PF00486: Trans_reg_C" amino acids 27 to 102 (76 residues), 59.9 bits, see alignment E=3.1e-20 PF13401: AAA_22" amino acids 150 to 254 (105 residues), 32.9 bits, see alignment E=1.1e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU3708)

Predicted SEED Role

"Disease resistance protein / Tetratricopeptide repeat-containing protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3JXT5 at UniProt or InterPro

Protein Sequence (920 amino acids)

>PFLU_RS18085 helix-turn-helix transcriptional regulator (Pseudomonas fluorescens SBW25)
MSDLSDQAVHFGPYRIHPRQRLVLEAGRPLRLGRRAVDILMILLEQAGNVVSKQELIARV
WPKSVVEDGNLRVHMAALRKALGDGQAGQRYIVTVAQRGYSFVAPLSIEPMTLPAEGAPQ
RPCHNLPLRRTRMIGRQALIDSLVQNLPAQRFITLTGAGGIGKTTVALRVAELLIGHYRD
GIRLLDLAPLSAASMILPNLAALLDLNHAEQEPLVTFARSLQERQLLLVIDNCEHLLDDI
ALISETLLRHAPRLHILATSREALRAEGEYVQRLEPLACPPATGNRAQALGYPALQLLIE
RAMSHQDSFELSEAELPLAIDICQRLDGIPLAIELVAAQIERFGLSGLLVQMEDNFRLLT
RGRRNALPRHQTLRATLDWSFELLTACEQICLRRLAVFRGGFSLASAAAVIAGEEVAPAE
VLGSITQLVAKSLLNVEVGDDEMVYRLLDITRTYALEKLSVADELDATRGRHAERCLALM
EQAREDWQLIATQPWIDRYAPLREDIRSALDWGLAQGGEHLLAIRLTVSAMPLWQELSLL
REHRLYVDQALALMSRAASPCPRLTMQLQLALGSLSYHAMGGAPQTIAAFVSARRLAEER
QDVAGQLRAVSGHMAVNLCAGLYRQALAQSEQFDRLDPRTDPQLDVSAQRLRVLAQHYNG
NQALARHNAEQVIQRMAHSGHLNRFAHGIGVQYDQSVASLTVLARILWLQGFPEQAWRTA
SQALALALQINHGTSICYTLALAGVVIARYNGDEHAAQSLQALLLEHAHKHSVQLFQTWA
GHYAGILGHQDLQGLGLIEDILITLGAHAVDDPGFERARTGGAGWCAAEILRVRAASIAD
PRASETLLLDALGLAHQQGALAWELRCATSLAQLWQTQGRLQAARDVLGSVHARFTEGFA
TPDLVRVRRLLDELQDKRPA