Protein Info for PFLU_RS17925 in Pseudomonas fluorescens SBW25

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 433 transmembrane" amino acids 20 to 38 (19 residues), see Phobius details amino acids 49 to 71 (23 residues), see Phobius details amino acids 84 to 109 (26 residues), see Phobius details amino acids 127 to 148 (22 residues), see Phobius details amino acids 169 to 193 (25 residues), see Phobius details amino acids 239 to 268 (30 residues), see Phobius details amino acids 312 to 332 (21 residues), see Phobius details amino acids 344 to 366 (23 residues), see Phobius details amino acids 373 to 392 (20 residues), see Phobius details amino acids 398 to 418 (21 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU3675)

Predicted SEED Role

"O-antigen flippase Wzx" in subsystem KDO2-Lipid A biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3JXQ6 at UniProt or InterPro

Protein Sequence (433 amino acids)

>PFLU_RS17925 hypothetical protein (Pseudomonas fluorescens SBW25)
MSVLKRIVSGIGANSFGQVVNLLIQLVSVPVLIASWGFGAYSEWVVLSAIPTYLALSDLG
VTTAAASKVVIWHERGRLKVARAVYSTSFAFLLLTGLSVLLLALGSLAFFDLFSLLNLKS
IRSGDGVLILSALTGYSLLCLFTNMISIRYRACKALPLSSFIMNVIRMLEWSAALLCAYL
TQSLVATSLMLLGVRSVGIVSKNLIANRLGVTLGFNPSAIGRRAFVTLIKPSLASLAFPI
GLALNVQGLIILLSVLLSPAHAAIFGLYRTISRVLVQFSTVVNQSLWPEISYAFSIGDNQ
LVRKMIRYALKFSLPIACVMGALVVLFGGTIFDLWSGRKDDYSSSIMLVLIIGALTHVAW
QVYWVALMATASYSSFAVVFMLVSVASSLAVFCLAPDYGLLGVCYVLVATEGVLFCFAKR
GFHRLERRMARAD