Protein Info for PFLU_RS17840 in Pseudomonas fluorescens SBW25

Annotation: undecaprenyl-phosphate glucose phosphotransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 463 transmembrane" amino acids 16 to 38 (23 residues), see Phobius details amino acids 48 to 69 (22 residues), see Phobius details amino acids 82 to 104 (23 residues), see Phobius details amino acids 111 to 129 (19 residues), see Phobius details amino acids 282 to 302 (21 residues), see Phobius details TIGR03025: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase" amino acids 28 to 460 (433 residues), 428.8 bits, see alignment E=3.2e-132 TIGR03023: undecaprenyl-phosphate glucose phosphotransferase" amino acids 31 to 459 (429 residues), 433.2 bits, see alignment E=1.6e-133 PF13727: CoA_binding_3" amino acids 77 to 237 (161 residues), 49.5 bits, see alignment E=5.5e-17 PF02397: Bac_transf" amino acids 275 to 458 (184 residues), 222.9 bits, see alignment E=2.3e-70

Best Hits

KEGG orthology group: K03606, putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase (inferred from 100% identity to pfs:PFLU3658)

Predicted SEED Role

"Capsular polysaccharide biosynthesis protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3JXM9 at UniProt or InterPro

Protein Sequence (463 amino acids)

>PFLU_RS17840 undecaprenyl-phosphate glucose phosphotransferase (Pseudomonas fluorescens SBW25)
MLNNTRMHRHLTPKGLTFWGQWTLASGLVVTLLFMLVSLKTGQLDYNYRILAAFTLLASL
PAYTFCDVYSKKDDYGVGLGRLFMGWLLTVGIVFAVGVACNASSLFPLEILLLWGTVSYP
LLALCYIPLHSLSRYYHRQLYQRHKSLIVGTGKLAVDLANTLSRQKHSPLVGLVGSHTEA
AQDAHPQILGELPQLPHLIRQHGIRRLYITHSLQDATHIEALYLNLLEISVDVIWVPDLN
NMLLLNHCVAEVDGLPAIFLNESPLTSRPTAALSKSLLDKSLALLAILVLSPLLLLFALL
IKLTSPGPVIFKQDRHGWNGQVIKVWKFRSMRVHDDHEVRQASRNDSRITPVGRFIRRTS
IDELPQLFNVLQGNMALVGPRPHAIAHNDFYSGKIHAYMARHRIKPGITGLAQVSGCRGE
TETLEKMQRRVDIDLRYINTWSLWLDIKILLKTPFTLLSKDIY