Protein Info for PFLU_RS17345 in Pseudomonas fluorescens SBW25

Annotation: L,D-transpeptidase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 527 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF20142: Scaffold" amino acids 64 to 191 (128 residues), 77.4 bits, see alignment E=2.7e-25 PF01471: PG_binding_1" amino acids 218 to 273 (56 residues), 33.1 bits, see alignment 7.5e-12 PF03734: YkuD" amino acids 304 to 455 (152 residues), 72.8 bits, see alignment E=7.3e-24

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU3558)

Predicted SEED Role

"FIG00962473: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K7V8 at UniProt or InterPro

Protein Sequence (527 amino acids)

>PFLU_RS17345 L,D-transpeptidase family protein (Pseudomonas fluorescens SBW25)
MFKKHACYLSICLLVAPLVATADEPLPVAPPALVNTAPVQQALAQLPSVCPSLAPQIDGA
AQARLQAFYQQQGDEPLWSADERRQALQTQLLMLADDGLDPTHYSLPALDATTNVLCSDI
GTSQHYLQALWDLHYGRLQQSRFEPLWHSQPPTRDPNTEVLAFAAAGLQDMAQAFDQARP
SADLYRSLRNAYATVRQQPLPHWDPVGSGPLLRPGMEDPRVPELARRLISGGYLATASSG
KQYHDELVKAVKAFQLSHSLQADGVIGAGTVAELNISPAIRREQLRINLERFRWLAQDLE
PEGVLVNVAAAQLSVYQSGIPVWQTRLQVGRAERQTPLLKSRITRLTLNPTWTIPPTIMR
EDKLPAIRLNPEYLRQQNLQVLDAEGHPLAPEQIDWARPGNILLRQEAGPRNPLGKIVMR
FPNPYSVYLHDTPSQPLFTKGPRAFSSGCVRVEQPLLLRDLLVSPAERARTDELLATGVT
HEFRLATPVPVLLGYWTVEVDRQGGLVYAPDIYARDLVLMKAMGSLL