Protein Info for PFLU_RS17260 in Pseudomonas fluorescens SBW25

Annotation: PTS sugar transporter subunit IIC/EAL domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 691 transmembrane" amino acids 29 to 47 (19 residues), see Phobius details amino acids 66 to 88 (23 residues), see Phobius details amino acids 95 to 112 (18 residues), see Phobius details amino acids 118 to 141 (24 residues), see Phobius details amino acids 162 to 186 (25 residues), see Phobius details amino acids 205 to 227 (23 residues), see Phobius details amino acids 235 to 251 (17 residues), see Phobius details amino acids 262 to 284 (23 residues), see Phobius details amino acids 292 to 315 (24 residues), see Phobius details amino acids 321 to 340 (20 residues), see Phobius details amino acids 345 to 364 (20 residues), see Phobius details amino acids 370 to 390 (21 residues), see Phobius details PF02378: PTS_EIIC" amino acids 28 to 329 (302 residues), 82.3 bits, see alignment E=3.4e-27 PF00563: EAL" amino acids 446 to 671 (226 residues), 202.6 bits, see alignment E=6.4e-64

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU3540)

Predicted SEED Role

"FIG00956795: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K5S5 at UniProt or InterPro

Protein Sequence (691 amino acids)

>PFLU_RS17260 PTS sugar transporter subunit IIC/EAL domain-containing protein (Pseudomonas fluorescens SBW25)
MAQTLFKLFFTQRLAALAGTESLRAIREGLLWILPCLLVSAGFLILSESARVLGFDPHWV
TFLAGLHNQISSVIPLLVAASIGYMLAIQHRLPQLPVAFLCLAHVVVATFILRDYPRASA
TFVLFIAIASPLLNVPAIAWLHRYRWTRLVNEELVGHNLRGTINMVVPGVITALALVSVL
SLLLQIPYVAQLQGPQVLDALESPYGSGLFVTLMNSLLWFFGIHGVYAMQPLFNVLDQAV
VLNSAALAAGEPIKYVLNGGLLGSFAFIGGSGGALCLLLAILLFSKSQSMRLLAVASLPL
SLFNVSEVLLFGLPIILNPRLFIPFLIVPALNAMLALTVVQMGWVSPAVVSVPFTAPVLL
NAYLSTHGDWVAVGLQVALLGLGTLVYAPYVRAIHRQATEGGTVYLKSLDMTFRGLEEKG
RLRELDPVLASHKTLARQANELSRIQQISDYEFYLEFQPQVSTRTGLCTGCEALMRARDA
DGKVHSPWEFLQWLAQAHLMPDVDVWVASQAVRQYQKWQKLGFSLPMTINISSATLTDAA
YGERLVDILAQARGQVSVEITEDALVSDIQVTRQTIQKLQAIGAKVYIDDFGTGFSALSY
LHQFPVDFIKIDRSFVVAQHDPKGAQVMTGMLRFCEALNLGVVVEGVETAEQLAFLNTGA
DLIIQGWYFSKALPDDQLQGFVREREALAQG