Protein Info for PFLU_RS17195 in Pseudomonas fluorescens SBW25

Annotation: acyl dehydratase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 296 PF01575: MaoC_dehydratas" amino acids 192 to 254 (63 residues), 45.7 bits, see alignment E=2.4e-16

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU3527)

Predicted SEED Role

"Acyl dehydratase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3KDT7 at UniProt or InterPro

Protein Sequence (296 amino acids)

>PFLU_RS17195 acyl dehydratase (Pseudomonas fluorescens SBW25)
MDYITQIIDPPPSRTRLLLDGVRALRKPTLDGAPVLPKERLVRSAAQLSAAGIEAYGRAC
GFRREQGVPLSYPHVLAFPLHLMLLTRPSFPYPASGMVHLANRIRQHQRLHAGQALRLEV
YCERWVAHPKGQALSIATRAYGADTLVWESDSLYLRRDVKDPVGEPWGDGLPLQEEGLLR
TQRWVLPADLGRRFAKVSGDFNPIHTSVIGAKIFGFRRAIAHGMWTLGRALAAQQPPGGL
DQAEAHCDFKLPIFLPGQVALWSHPVTGPRREFEVRNFAGDKPHMRGLFIWKESVE