Protein Info for PFLU_RS17175 in Pseudomonas fluorescens SBW25

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 346 signal peptide" amino acids 1 to 36 (36 residues), see Phobius details PF14870: PSII_BNR" amino acids 83 to 136 (54 residues), 31.1 bits, see alignment 3.1e-11 amino acids 132 to 332 (201 residues), 71.1 bits, see alignment E=2.1e-23 PF15902: Sortilin-Vps10" amino acids 161 to 264 (104 residues), 36.6 bits, see alignment E=4.9e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU3522)

Predicted SEED Role

"FIG002465: BNR repeat protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3KDI7 at UniProt or InterPro

Protein Sequence (346 amino acids)

>PFLU_RS17175 hypothetical protein (Pseudomonas fluorescens SBW25)
MGWVVCRPRAARRVALLATALSLLVGGVSVTPALAASDTVATPAFAIESPKAAKGLMIDV
VHAGKRLVAVGDRGHILYSDDQGSTWTQAKVPTRQLLTAVFFIDDKQGWAVGHDAQILAS
SDGGATWTQQYQDLKREAPLLDVWFNDANHGLAVGAYGALIETTDGGKTWQDVSDRLDNE
DQFHLNAIAHIKDAGLFIVGEQGSMFRSSDDGQTWEKLEGPYEGSLFGVISTAQPQTLLA
YGLRGNLYRSTDFGSTWEPVELNAARGALEFGLSGATLLEDGSLVVVGNGGSVVVSHDDG
VTFSVFNRPDRISLSSVTAAGNGNLILAGQGGVRVATPTGAEPTKQ