Protein Info for PFLU_RS16945 in Pseudomonas fluorescens SBW25

Annotation: MmgE/PrpD family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 449 PF03972: MmgE_PrpD_N" amino acids 6 to 247 (242 residues), 240.2 bits, see alignment E=2e-75 PF19305: MmgE_PrpD_C" amino acids 267 to 439 (173 residues), 161.5 bits, see alignment E=1.8e-51

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU3474)

Predicted SEED Role

"MmgE/PrpD family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3KCI0 at UniProt or InterPro

Protein Sequence (449 amino acids)

>PFLU_RS16945 MmgE/PrpD family protein (Pseudomonas fluorescens SBW25)
MSHTQALCRFLAELNHTHLPEDVLARTEDLYLDWLASALASQGAHPIPLFERYAQKMGPS
SGPAQVIVNGASTSAYFAALVNGASSHLVEQDDLHNSSVLHPATVVFPAALAAAQDLGKS
GRDLLLASVAGYEAGIRIGEFMGRSHYRIFHTTATVGTLAAAVAVGKLLDFNQEQFINLL
GSAGTQAAGLWEFLRDAADSKQLHTAKAAADGLLAAYLTAEGLTGARNILEGDQGLAAGM
SSDAEPSKLSADLGSRWALLETSFKFHASCRHTHPAADALLDLMQRERLTAADIAHVETR
VHQGAIDVLGRVTVPTSVHQAKFSMGTVLGLIAVHGKAGLTEFHERALTDPAVSSFRDKV
SMTLDAEVDSAYPQRWLGRVTVTTLDGRTLHGAIDEPKGDPGNTLSRRELADKFQRLAQF
SGARTPLEAHALIEKVWDLRNTASMAHWL