Protein Info for PFLU_RS15820 in Pseudomonas fluorescens SBW25

Annotation: filamentous hemagglutinin N-terminal domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 500 1000 1500 2000 2500 3000 3500 4058 signal peptide" amino acids 1 to 47 (47 residues), see Phobius details PF05860: TPS" amino acids 60 to 307 (248 residues), 202.7 bits, see alignment 2.6e-63 TIGR01901: filamentous hemagglutinin family N-terminal domain" amino acids 82 to 179 (98 residues), 66.5 bits, see alignment (E = 1.6e-22) PF05594: Fil_haemagg" amino acids 232 to 308 (77 residues), 9.3 bits, see alignment (E = 0.0005) amino acids 312 to 368 (57 residues), 9.5 bits, see alignment (E = 0.00044) amino acids 383 to 447 (65 residues), 13.3 bits, see alignment (E = 2.8e-05) amino acids 447 to 502 (56 residues), 18.9 bits, see alignment (E = 4.9e-07) amino acids 528 to 593 (66 residues), 12.1 bits, see alignment (E = 6.6e-05) amino acids 615 to 695 (81 residues), 17.9 bits, see alignment (E = 1.1e-06) amino acids 686 to 756 (71 residues), 22.8 bits, see alignment (E = 3e-08) amino acids 739 to 796 (58 residues), 8 bits, see alignment (E = 0.0013) amino acids 794 to 859 (66 residues), 21.7 bits, see alignment (E = 6.5e-08) amino acids 841 to 901 (61 residues), 20.4 bits, see alignment (E = 1.7e-07) amino acids 1014 to 1064 (51 residues), 14.7 bits, see alignment (E = 1e-05) amino acids 1030 to 1086 (57 residues), 15.7 bits, see alignment (E = 5.1e-06) amino acids 1078 to 1148 (71 residues), 15.8 bits, see alignment (E = 4.7e-06) amino acids 1132 to 1177 (46 residues), 16.8 bits, see alignment (E = 2.3e-06) amino acids 1161 to 1231 (71 residues), 24.9 bits, see alignment (E = 6.8e-09) amino acids 1227 to 1281 (55 residues), 8.9 bits, see alignment (E = 0.00066) amino acids 1313 to 1374 (62 residues), 18.1 bits, see alignment (E = 8.8e-07) amino acids 1370 to 1429 (60 residues), 10.8 bits, see alignment (E = 0.00017) amino acids 1443 to 1507 (65 residues), 6.7 bits, see alignment (E = 0.0033) amino acids 1477 to 1531 (55 residues), 9.6 bits, see alignment (E = 0.0004) amino acids 1517 to 1573 (57 residues), 17.2 bits, see alignment (E = 1.7e-06) amino acids 1563 to 1635 (73 residues), 5.2 bits, see alignment (E = 0.0099) amino acids 1621 to 1688 (68 residues), 7.6 bits, see alignment (E = 0.0017) amino acids 1707 to 1763 (57 residues), 17.8 bits, see alignment (E = 1.1e-06) amino acids 1739 to 1768 (30 residues), 11.8 bits, see alignment (E = 8.4e-05) amino acids 1779 to 1834 (56 residues), 8.4 bits, see alignment (E = 0.001) amino acids 1831 to 1876 (46 residues), 5.2 bits, see alignment (E = 0.0094) amino acids 1866 to 1900 (35 residues), 7 bits, see alignment (E = 0.0027) amino acids 1906 to 1950 (45 residues), 7 bits, see alignment (E = 0.0026) amino acids 2149 to 2199 (51 residues), 4.3 bits, see alignment (E = 0.019) amino acids 2239 to 2283 (45 residues), 18.6 bits, see alignment (E = 6.2e-07) amino acids 2357 to 2384 (28 residues), 3.5 bits, see alignment (E = 0.032) amino acids 2691 to 2737 (47 residues), 10.2 bits, see alignment (E = 0.00026) amino acids 2735 to 2780 (46 residues), 3.5 bits, see alignment (E = 0.033) amino acids 2797 to 2843 (47 residues), 8.4 bits, see alignment (E = 0.00095) TIGR01731: adhesin HecA family 20-residue repeat (two copies)" amino acids 400 to 436 (37 residues), 15.7 bits, see alignment (E = 1.2e-06) amino acids 442 to 476 (35 residues), 11 bits, see alignment (E = 3.5e-05) amino acids 479 to 510 (32 residues), 17.8 bits, see alignment (E = 2.6e-07) amino acids 513 to 539 (27 residues), 16.8 bits, see alignment (E = 5.5e-07) amino acids 541 to 580 (40 residues), 26.5 bits, see alignment (E = 4.7e-10) amino acids 582 to 621 (40 residues), 28 bits, see alignment (E = 1.7e-10) amino acids 623 to 662 (40 residues), 20.4 bits, see alignment (E = 4.1e-08) amino acids 663 to 702 (40 residues), 16.1 bits, see alignment (E = 8.5e-07) amino acids 704 to 742 (39 residues), 20.7 bits, see alignment (E = 3.3e-08) amino acids 745 to 785 (41 residues), 19.1 bits, see alignment (E = 9.9e-08) amino acids 766 to 804 (39 residues), 13.6 bits, see alignment (E = 5.5e-06) amino acids 786 to 826 (41 residues), 24.7 bits, see alignment (E = 1.8e-09) amino acids 807 to 846 (40 residues), 29.2 bits, see alignment (E = 6.9e-11) amino acids 827 to 867 (41 residues), 15.6 bits, see alignment (E = 1.3e-06) amino acids 848 to 888 (41 residues), 15.1 bits, see alignment (E = 1.8e-06) amino acids 869 to 908 (40 residues), 10.8 bits, see alignment (E = 4.1e-05) amino acids 973 to 1004 (32 residues), 27.8 bits, see alignment (E = 1.8e-10) amino acids 1015 to 1053 (39 residues), 27.1 bits, see alignment (E = 3.1e-10) amino acids 1054 to 1093 (40 residues), 25.8 bits, see alignment (E = 7.8e-10) amino acids 1075 to 1115 (41 residues), 17.5 bits, see alignment (E = 3.2e-07) amino acids 1116 to 1155 (40 residues), 20.7 bits, see alignment (E = 3.2e-08) amino acids 1157 to 1196 (40 residues), 18 bits, see alignment (E = 2.3e-07) amino acids 1199 to 1238 (40 residues), 14 bits, see alignment (E = 4e-06) amino acids 1241 to 1281 (41 residues), 11 bits, see alignment (E = 3.5e-05) amino acids 1265 to 1287 (23 residues), 8.3 bits, see alignment (E = 0.00026) amino acids 1303 to 1341 (39 residues), 23.4 bits, see alignment (E = 4.6e-09) amino acids 1345 to 1381 (37 residues), 12.5 bits, see alignment (E = 1.2e-05) amino acids 1420 to 1447 (28 residues), 13 bits, see alignment (E = 8.3e-06) amino acids 1449 to 1481 (33 residues), 23.4 bits, see alignment (E = 4.6e-09) amino acids 1489 to 1531 (43 residues), 6.3 bits, see alignment (E = 0.001) amino acids 1533 to 1557 (25 residues), 13.9 bits, see alignment (E = 4.5e-06) amino acids 1554 to 1595 (42 residues), 16.3 bits, see alignment (E = 7.8e-07) amino acids 1596 to 1635 (40 residues), 17.5 bits, see alignment (E = 3.2e-07) amino acids 1637 to 1676 (40 residues), 21.7 bits, see alignment (E = 1.6e-08) amino acids 1679 to 1720 (42 residues), 7.3 bits, see alignment (E = 0.00051) amino acids 1722 to 1763 (42 residues), 25.5 bits, see alignment (E = 9.8e-10) amino acids 1788 to 1811 (24 residues), 9.7 bits, see alignment (E = 9.3e-05) amino acids 1860 to 1896 (37 residues), 17.7 bits, see alignment (E = 2.7e-07) amino acids 1948 to 1983 (36 residues), 10.1 bits, see alignment (E = 6.7e-05) amino acids 2103 to 2141 (39 residues), 19.8 bits, see alignment (E = 6e-08) amino acids 2246 to 2283 (38 residues), 12.4 bits, see alignment (E = 1.3e-05) amino acids 2737 to 2772 (36 residues), 10.8 bits, see alignment (E = 4.1e-05) amino acids 2803 to 2839 (37 residues), 13.5 bits, see alignment (E = 6e-06) PF13332: Fil_haemagg_2" amino acids 2856 to 2917 (62 residues), 23.7 bits, see alignment (E = 1.2e-08) amino acids 2917 to 2981 (65 residues), 32 bits, see alignment (E = 3.4e-11) amino acids 2992 to 3150 (159 residues), 42.7 bits, see alignment (E = 1.7e-14) amino acids 3079 to 3184 (106 residues), 29.3 bits, see alignment (E = 2.2e-10) amino acids 3226 to 3401 (176 residues), 148.3 bits, see alignment (E = 5.9e-47) PF04829: PT-VENN" amino acids 3739 to 3789 (51 residues), 65.7 bits, see alignment (E = 9e-22) PF15637: Tox-HNH-HHH" amino acids 3969 to 4028 (60 residues), 39.6 bits, see alignment (E = 1.4e-13)

Best Hits

Predicted SEED Role

"Putative large exoprotein involved in heme utilization or adhesion of ShlA/HecA/FhaA family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3KCX5 at UniProt or InterPro

Protein Sequence (4058 amino acids)

>PFLU_RS15820 filamentous hemagglutinin N-terminal domain-containing protein (Pseudomonas fluorescens SBW25)
MDVRQFAFLARQPSAALKSRSNFLGLPKRGLALVLANAMFWQPLLAQADGIVVSAPGTTL
GQAGNGVPIVNIAAPNGSGLSHNQFQDYNVGQQGVILNNATGRTQSTQLGGIILGNQNLN
GTAASVILNEVNGGSPSQLRGYTEVAGQSAHVIVANPYGISCNGCGFINTPQATLTTGKA
VIENGQITRYQVDQGSVAIDGAGLNASNVDQFEIITRSAKINAEIQAKNLTIIAGANDVD
AKTLKATARAADPATKPQLAIDSSALGGMYAGAIKLVSSEAGVGVKLDSKMVASSGDMQL
DASGDLTLVDTAAAGAINIKADNLQAKGPVYAGTTLDVKTQGDLTSQNNLVAKDRITLTS
GGQLTNNGIIESGVNADNTRNTTGDVSISAQRVNNTGKNIIASRDLVVNATQTLTNQGGT
LSGQTTTLNAQTLDNQNNGRALSVSALKVTADEVFNTLGVITSSGDLTANVGHLNNHNGE
LSSAGNTTVNASSLDNSDGQVTGDVALNIGLIGALNNQNGVLGSGQRVSITAASLDNSHN
GSLVSDGGLTARIASLFDNQNGDLSAKGAVDLQTGSLDNRNGSLSGKDRLTLRSDSLDNR
TGTVRAINDLQLNVGQLDNRQKGLLNSQAAINFSGTQLDNRGGLLSAVGPIRLDAASTDN
SGGRIASQTDLIANVAQFTNQGGELVAQGALTLNGKGLDNRSGGLVGATKALKLNVDAVD
NRGGEISSTVDVSLQGSQLNNSDNGKILAGTDLALRVTQIINQTKGQLFSKGATTVAGQS
LDNSGGNLVTQQALDIRLDNALSNVAGLISSEGTLVVNAGSLDNTGGNLSSAAAMALTTK
GVLNNQSGSISTDGSLTLNSAILDNSQKGLISGKNATVVTTGVFDNTQAGQLISGDTLDL
SATQVSNGVASRIASDKALTASVTGFDQQGGQLFSKTSLSLDLNQGQLNNQNGLINAPLL
MLKNLKDINNQGGEISSAQAFALDARNLDNSNGKLISNQGLTLRLEHLLASVKGLISAQT
LDLQSARLDNTGGLISSRDTLGVTVGGQVVNQGGTLIADGNMQISADSLDNSDGGQVVAQ
GALALTVDHVINRAKGLLSGKTDLTLIGQDLDNSGGSLLSQKNLKAGLSGDLTNSQGLLS
AEGRLDVTAASLTNTLGSLSAAGPLTLTTTGDVLNQGGEIVTDAGLVLNSASLDNSNNGS
ISGKGAVRVNAGVLDNSHNGRLNSGDTLDLTATQLTNQDSGRIASSGALTASVTGLDQQG
GQLFSNTALTLDVNQGQLNNQNGLISAPLLMFKNLTDINNDGGEISSVQAFNVTARSLNN
NNGKLLSNQALTLRVDQALTNLKGLIAAATLDVKASGLDNSGGTLTSRANLDVNLDGLLN
NQNRGLINATNGLTINSRGINNQSGSLLGSAIAIDFGAATADLDNSGGLITTAGVLSIQH
LRDLSNRSGEISSTQSLALSARALDNTGGKLISNNVLTVNADAAQNLGGLLSGWQGLSLT
STNLDNRNKGTLSSRDGDVSVAVNGTVLNSGEGAIVSSKNLNLNAANLDNSNGGVISSGG
AQTLTLSGLLTNAQGGLIDSGAALVIQAMTLGNAGGTVNAQQGLSFTGTALDNTGGNLVG
NAAVTLDLLGVLTNTNGKLASVGPLRVQRSTQIDNQGGQLASQGLMTLLTGGLDNRNRGT
VAANDLLTITTPGVVQNDADGLIYSQSGDLQVQAGSLSNGKGTLQSQGALTLTTGADINN
QSGRIIAKAGDLTVSAGNVDNRGGVLSSLQSAFTAQLTGVLKNGYDLNNNRQGGVTQAQR
LNLTALGGIDNYGGRVSAQNGDAIITTGNFDNRNGGLYAKGKISVTGNDFDNSGDNDGQI
AGQQIDLNLSGALNNRLGIIESDSTLAIKAASLDNQTGQLRVLGGSGKTDFQIGGLFDNR
NGTLESANTNLSLAAGGFLNAGGSLLHVGDGTFDISTANVTGAGGSIVTRGGLTLNADSW
SNSNVIQAARLNVNVNNFTQTASGQLLASTSLVGSGGNWTNDGLIASDGALSLNLGGTYA
GNGRLSSLGTLGLSAGQVSLNAPSSIAGGGDTTVSVGGQLNNVGRLTSATNLIVNAGGIN
NQGTLGSGQALTVTTGALVNDHGLIFSGADMSLRLDTLNNSYADIYSLGNLSIDRDGQGG
LATSVINSSSSIQSDGNLSLAASTLQNVRAVLTTSAGGIYTASITEYPCIEGPNYAGDCS
GKQNHLWQIDQREKLEVTAASAGSSITAGKNLTIAGGDVLNASSTIGAAGNLNITANNLT
NSGVETGETQTWRLFVSERTRNAGMWYNAAAAFNNRYAIGGAGYNPQDLSGLVGAMSSFI
GMTEQERTALRRVTTISTGDQSYAAVIQAAGAVNIKAQDGIDNRVARPGFTYVGAGAKTT
TGSAGASGAGTFSTRITVNQQLPPNLAQQQVNPLTLPGFALPTGQNGLFRLSGQGSSTPA
ASGPQSWTMGGASVTPTQRQPVLPSVQPPNIQPGNGAQASASGADLTAADYQAPNVNVGA
SAINVSLPAASAEGSALPGRSTAFTINRVQGLPASSGQSKPHKYLIETNPVLTDLKQFMS
SDYLLSNLGYDPDQSAKRLGDGFYEQNLIQQAVVARTGQRFIDGQTSDEGMFKYLMNNAV
ASKQELNLSLGVSLTSEQVAALTHDIVWMENAEVNGEQVLVPVLYLANANNRLAANGALI
QGSDVTLIAGKDLSNAGTLKASSNLSATTGNDLVNSGLVEAGNRLDLLAGNNLINKAGGV
IAGRDVSLTAGRDVINERTVTTHESGSSYRTERTDFVDNAARIEAANSLTVNAGRDVNNA
GGVLKSGTDTTISAGRDVNLVSAEQVTSGARGLYTSQAITQYGSTVDAGQDLKVSAGRDV
TAIASQLAAKRDVSMSAVGDLTLASAADEQHSYGKTKKVTSQEDHVQQVSTTVTAGGNVA
LSANQDLLVSASRVSAGKEAYLYAGNDLDLNAAQNSDYSYYRKTKTSSGLLSSSQKTRMD
SSSSITQQGSSISADTVVVRAGRDIGTTASDVVSTNATSLIAGRNVVIDGATETFEESHS
TSSKKSGLLGTGGIGFTIGSTSLQNTSTSTTESSKASTIGSVLGSVDIQAGKDLSIKGSD
VIAGKDIHLIGQNVNIIAAENNNKSEQTSKSKSGGLTLALSGTVGSAVNTAYQTAKQAKQ
EDDSRVSALQGIKAGLTGVQAWQAAQQNGGMTADNAGQFVGISISLGAQKSSSKQAQEQT
ISQGSSLTSGNNLSIVAVGNGTPGVDGDIHVQGSSLKAVNDISLTAERDIRLEAAANSQK
LDGKNNSGGGAIGISLGVGPQGGGLSIFANANKGTGNEKGTGTTWTETTLDAGHQANLVS
GRDTALKGAQVSADKIAASVGRDLTLQSLQDTDNYKSKQTDVSGGVSVAIIGTGGSASLS
VSQTKIDSKYQSVQEQTGLYAGKGGYQVDVVNHTQLDGSVIASTAEADKNRLSTGTLGWS
DIKNEAEYKSQMQSASVSSSSDGSGGFTSNMPSGTLIAYNHSGSASGTTSSAVSNGTLDI
RDPAKQQQDVATLSHDVEHANDSISPIFDKEKEQKRLQQVRLISEIGTQSMDIIRTQGAI
NAAKAQKDPVAIAAARDKLIAGGNTDPTAEQIATQITNTVMQQYGTGSDYQRAAQAVTAA
LQGLAGGNIAQALTGAAAPYLAEQIHSLTADNPEANLMAHALLGALVAQAQGNSALAGAA
GASVGELIARQLYPDKKTADLTESERQTVSALSTLAGGLAGAITGGGAAGAVTGAGTAQN
AVDNNFLNQGRPDAYATRYAGCKGETGCELTVRKDIAKESAENINKLKGCWDAGDTACVA
KMREQIETDRNAYTKLKIQDPMVGGAYEQSAEFYADIVDNCGGKCGWLQAALEKTLADGV
NLVVYALLGGADAPKRSGGVGSTSESGPKAAGEVVPPAPVVTSGTTRTGVVRTNAADWRV
LRDNWDDLGYGQILSTENRAAIAKGKTPKVDDAWVKVFPEDAGLKGERIPMHHVQGSPLT
VPLPDTRHLDAHMPGGFRYNPGGPGSALPAYPPKKGAE