Protein Info for PFLU_RS15665 in Pseudomonas fluorescens SBW25

Annotation: multidrug efflux RND transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1036 signal peptide" amino acids 9 to 11 (3 residues), see Phobius details transmembrane" amino acids 12 to 29 (18 residues), see Phobius details amino acids 339 to 358 (20 residues), see Phobius details amino acids 365 to 388 (24 residues), see Phobius details amino acids 394 to 415 (22 residues), see Phobius details amino acids 437 to 458 (22 residues), see Phobius details amino acids 469 to 496 (28 residues), see Phobius details amino acids 534 to 551 (18 residues), see Phobius details amino acids 861 to 880 (20 residues), see Phobius details amino acids 887 to 907 (21 residues), see Phobius details amino acids 913 to 936 (24 residues), see Phobius details amino acids 961 to 980 (20 residues), see Phobius details amino acids 990 to 1014 (25 residues), see Phobius details PF00873: ACR_tran" amino acids 1 to 1016 (1016 residues), 1124.6 bits, see alignment E=0 TIGR00915: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family" amino acids 1 to 1022 (1022 residues), 1334.3 bits, see alignment E=0 PF03176: MMPL" amino acids 300 to 524 (225 residues), 37 bits, see alignment E=3e-13 PF02355: SecD_SecF" amino acids 334 to 479 (146 residues), 21.5 bits, see alignment E=2e-08

Best Hits

KEGG orthology group: K03296, hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family (inferred from 59% identity to ctt:CtCNB1_1770)

Predicted SEED Role

"RND efflux system, inner membrane transporter CmeB" in subsystem Multidrug Resistance Efflux Pumps or Multidrug efflux pump in Campylobacter jejuni (CmeABC operon)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3KC45 at UniProt or InterPro

Protein Sequence (1036 amino acids)

>PFLU_RS15665 multidrug efflux RND transporter permease subunit (Pseudomonas fluorescens SBW25)
MVDFFIERPNFAWVIALFIVLAGALTLGRLPVSQYPDVAPPQISVSASYPGASAQIINLN
VTSLLEEELNGLPDLLYYESTSANGSADTTVTFKPGTDPDRAQIDVQNRLQRVVGRLPQA
VIEQGLKVEQVRANFLMIYALSYTDEQQDSVGLADFAARAVNNEIRRVAGVGRVEMYTAE
RAMRIWVDPAELVGYGLSMADVSKAIAAQNVQVPAGSMGERPGPVDQQITATVMVQGQLE
SVEAFGNIVLRANDDGASVRIHDVARVELGRQDYRFDARLNGKPVAAMSVQLAPGGNALQ
TAQAVKARLEHLSSTLPGNMRLSVPYDTAPFVQAAIKQVVYTLIEAMVLVFLVMWLFLQK
LRYTLIPAVVVPVCLSGTLAVMGVLGFSINMMTLFGMVLAIGMLVDDAIVVVESVERLIS
QERLSPKDATRKAMRQISGAIVGITLVLATVFLPLAFMGGSVGVIYQQFALVLSVSILFS
GFLALTLTPALCAALLKPFDPTRRVPGFNRHFDRLTAHYERVAGTWVRRGTRSVCLYLLL
LAVLVLAYHRLPSSFIPSEDQGYTVTDIQLPPAASAARTEVTVNAWEQYALAQPATHQVL
SILGFSFSGEGANAALSYISLKDWSVRGSDQASRAVAQRATRAFEDVSDGSVFSTVPPAV
DGLGTSAGFELRLQDLTGHPHAELLGARAQLLAAAKASPVIGSLRDEGLADAPQIKIDID
REKAEALGVSFDVISAALSAALGSQQINEFANQGRMQRVIVQADGSSRQTPEALLRLQVP
NRQNKLVPLEAFSRFEWQVGPLQIVRYNGSQSLRFTGDAAAGYSTGQAMQALQDIAAQLP
AGFSLEWAGLSLQEQQSSAQVPLLMGLSLLTVLLVLVALYESWAIPFAVLLIVPVGVLGS
VAAVTVMGMPNDVYFKVGLVTIIGLSAKNAILIVEFAKALHAQGASLANAAIQAARLRFR
PIIMTSLAFILGVVPLALATGPGAASQQAIGTGVIGGMLAATVLGVLWVPVLFVKVMSVS
QRLQGRQWVVDANKGP