Protein Info for PFLU_RS15055 in Pseudomonas fluorescens SBW25
Annotation: aldehyde dehydrogenase family protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 51% identical to ALDH4_BACSU: Putative aldehyde dehydrogenase DhaS (dhaS) from Bacillus subtilis (strain 168)
KEGG orthology group: K00146, phenylacetaldehyde dehydrogenase [EC: 1.2.1.39] (inferred from 100% identity to pfs:PFLU3086)MetaCyc: 49% identical to cumic aldehyde dehydrogenase (Pseudomonas putida F1)
Aryl-aldehyde dehydrogenase. [EC: 1.2.1.29]
Predicted SEED Role
"Aldehyde dehydrogenase (EC 1.2.1.3)" in subsystem Entner-Doudoroff Pathway or Glycerolipid and Glycerophospholipid Metabolism in Bacteria or Methylglyoxal Metabolism or Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate (EC 1.2.1.3)
MetaCyc Pathways
- superpathway of NAD/NADP - NADH/NADPH interconversion (yeast) (7/8 steps found)
- ethanol degradation II (3/3 steps found)
- ethanol degradation IV (3/3 steps found)
- phenylethylamine degradation I (2/2 steps found)
- putrescine degradation V (2/2 steps found)
- mitochondrial NADPH production (yeast) (4/5 steps found)
- octane oxidation (4/5 steps found)
- phytol degradation (3/4 steps found)
- putrescine degradation III (3/4 steps found)
- superpathway of glycol metabolism and degradation (5/7 steps found)
- L-phenylalanine degradation II (anaerobic) (2/3 steps found)
- ethanol degradation III (2/3 steps found)
- hypotaurine degradation (2/3 steps found)
- putrescine degradation IV (2/3 steps found)
- superpathway of L-arginine and L-ornithine degradation (9/13 steps found)
- ethylene glycol degradation (1/2 steps found)
- phenylethanol degradation (1/2 steps found)
- phenylethylamine degradation II (1/2 steps found)
- putrescine degradation I (1/2 steps found)
- Entner-Doudoroff pathway II (non-phosphorylative) (6/9 steps found)
- D-arabinose degradation II (2/4 steps found)
- L-tryptophan degradation X (mammalian, via tryptamine) (2/4 steps found)
- fatty acid α-oxidation I (plants) (2/4 steps found)
- superpathway of L-arginine, putrescine, and 4-aminobutanoate degradation (7/11 steps found)
- serotonin degradation (4/7 steps found)
- p-cymene degradation to p-cumate (1/3 steps found)
- histamine degradation (1/3 steps found)
- styrene degradation (1/3 steps found)
- 3-methyl-branched fatty acid α-oxidation (3/6 steps found)
- noradrenaline and adrenaline degradation (8/13 steps found)
- L-phenylalanine degradation IV (mammalian, via side chain) (5/9 steps found)
- dopamine degradation (2/5 steps found)
- aromatic biogenic amine degradation (bacteria) (4/8 steps found)
- superpathway of ornithine degradation (4/8 steps found)
- superpathway of phenylethylamine degradation (6/11 steps found)
- ceramide degradation by α-oxidation (2/7 steps found)
- sphingosine and sphingosine-1-phosphate metabolism (4/10 steps found)
- alkane oxidation (1/6 steps found)
- limonene degradation IV (anaerobic) (1/7 steps found)
- p-cymene degradation (1/11 steps found)
- ceramide and sphingolipid recycling and degradation (yeast) (4/16 steps found)
- superpathway of pentose and pentitol degradation (16/42 steps found)
- anaerobic aromatic compound degradation (Thauera aromatica) (4/27 steps found)
KEGG Metabolic Maps
- 1,2-Dichloroethane degradation
- 3-Chloroacrylic acid degradation
- Arginine and proline metabolism
- Ascorbate and aldarate metabolism
- Biphenyl degradation
- Butanoate metabolism
- Fatty acid metabolism
- Glycerolipid metabolism
- Glycolysis / Gluconeogenesis
- Histidine metabolism
- Limonene and pinene degradation
- Lysine degradation
- Phenylalanine metabolism
- Propanoate metabolism
- Pyruvate metabolism
- Styrene degradation
- Tryptophan metabolism
- Tyrosine metabolism
- Urea cycle and metabolism of amino groups
- Valine, leucine and isoleucine degradation
- beta-Alanine metabolism
Isozymes
Compare fitness of predicted isozymes for: 1.2.1.3, 1.2.1.39
Use Curated BLAST to search for 1.2.1.29 or 1.2.1.3 or 1.2.1.39
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See C3KB96 at UniProt or InterPro
Protein Sequence (496 amino acids)
>PFLU_RS15055 aldehyde dehydrogenase family protein (Pseudomonas fluorescens SBW25) MHSLELLPAVQAFLAQPGRLFIGGTWQDAASGRRFAVENPATEQTLTEVAQGDERDVNAA VAAARAAFTGTWALQSPAQRGLLLFRLADLLDQHREELAQLITLENGKPIANARGEAASA ANIIRYFAGWPTKIEGSTLPVSPASGAPMLNYTLREPVGVCALIVPWNFPLTMCVWKLGP ALATGCVAVLKPAEQTPLIAIRLVQLIEAAGFPAGVVNLITGLGADTGAPLAQHPDVDKI AFTGSTQVGRLIAQAATSNMKKVSLELGGKSPNIILPDADIARAAKGAADGIFYNQGQVC TAGSRLYVHASVLDQVLEELQRHAAAYVLGNGLDPANSMGPLVSARQLNTVKGYLQRGQE EGAELICGGGRPEHLEHGHFIQPSVFLDRAERACVAREEIFGPVLTVMSWTEIDELVLRA NDSPYGLAAGLWTRDLRSAHRVAAQLKAGSVWINCWNVVDPSSPFGGYKQSGWGREMGKN VIDAYTETKSVFVDLA