Protein Info for PFLU_RS14055 in Pseudomonas fluorescens SBW25

Annotation: phage tail tape measure protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1017 transmembrane" amino acids 209 to 234 (26 residues), see Phobius details PF06791: TMP_2" amino acids 204 to 350 (147 residues), 153.8 bits, see alignment E=5.6e-49 TIGR01541: phage tail tape measure protein, lambda family" amino acids 629 to 969 (341 residues), 156.1 bits, see alignment E=6.2e-50 PF09718: Tape_meas_lam_C" amino acids 765 to 839 (75 residues), 102.1 bits, see alignment 1.4e-33

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU2882)

Predicted SEED Role

"Phage tail length tape-measure protein 1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3KA59 at UniProt or InterPro

Protein Sequence (1017 amino acids)

>PFLU_RS14055 phage tail tape measure protein (Pseudomonas fluorescens SBW25)
MNIAELGVKIDSADAIQAKTSLDEMAKAGGRAEQSAVSLMNEMQALEKSLSTSAKTTQDL
AKQRDALAKLTKTGAYGEAEAAKISAQLDKQQIALAKSALDEQKALNSLLGAIDPARAAL
AKLDTQVEQLGKHLDAGRISQDQYNTALSKIDKDYAKLEKTTTGFDKLRLGTRQAQENVV
QLGNALSSGDWGSGVRAVAQLGAGAGAGAAGMLAILAPLALATAAVGGLAVAYYKGSEEQ
DRYNKSLILTGNYAGVSAGQLGDMARQVSATVGTTGQAAEVLALLAGNGKIAGDSFTGIT
QAAVSMQEATGKAVNETVAEFVKLADDPVKASAALNEQYHYLTASVYSQIAALEEQGDHA
GAVKLATESYADAINERTPKILENLSFWERGYNAVARAADNLKNIGRPDIGADIEQARRD
LTDAQKGNIGLFQNQKEMIEFRQNRLNMLEDEKAAQADIAKWEGEQAKAQGAAVTAMAKV
DALTKSSLTNEQKRTKEIEDYKQQLADIRKVAPNDPRLQQDVVEKNISNINAKFKDPKAA
GTQVDLTAFNDAKNELAAITDTYKNYQKELEAAQKAGLLSEEDYLLRRQALIGNQLDQTT
AAYEAEIAALEAAKGKKSTSAAQSIQLDQKIADARAGMVKAQKDADSQLEVLATNETGRL
AKQERAISTYVQALGQQQRALELAGQRAVLGVGQGDRQNALSGELNSQQDRFAQQSLELA
NQKSDPSRNMSEEEFKRKSQALADANKAATDQIRQNYADVENAQGDWTKGATAAWDNYLD
SAQNIAGQTKSLFSNAFSSMEDSIVNFAMTGKASFSDFAKSILADMARIATRQASSALLG
SLVGAAASYLGGSAAGGGNGMAAGSAGATSSNLGASSAGYSSTYFPQAKGGAWSGGVQMF
ADGGAFTNSIVSKPTAFGMANGKTGVMGEAGEEAIMPLTRTSSGKLGVMAAGGGSGSTQI
NVEVHIDGEGNASSSADAPGYDLFGKELAAFVEQKYQQMRNKDMGQGGVINKAIKGR