Protein Info for PFLU_RS13990 in Pseudomonas fluorescens SBW25

Annotation: head morphogenesis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 348 PF04233: Phage_Mu_F" amino acids 133 to 244 (112 residues), 39.7 bits, see alignment E=3.6e-14 TIGR01641: phage head morphogenesis protein, SPP1 gp7 family" amino acids 139 to 247 (109 residues), 49.2 bits, see alignment E=2.9e-17

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU2869)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3KA46 at UniProt or InterPro

Protein Sequence (348 amino acids)

>PFLU_RS13990 head morphogenesis protein (Pseudomonas fluorescens SBW25)
MLERLKAGEVKKFEKYLRHIDTLVREQLTRKELTTYSRDRLEQFLARVDGKLLDIYKAYG
DLVQADLVDIALYESTFEAKSLSNALSIDAVVPTNTVIRAAVFSYPLQVKGIDGGKLLKS
FVSGWTRTETMRVTNTIRLGFGQGQTNAQIIQAIRGTAAQNFTDGVLAVSNRNAAAVVQT
AIQHVATTARMETLKANSDVVLGYRWVSTLDRKTSQQCKGLDGMRFDLGKGPLPPAHINC
RSTTVPTTRLSEMFAKDATRASVGDNGGAQVDAGLNYYEWLATQPASFQDHALGPVRGKL
FRDGGLTPEKFAKLQLDKSFKPLTLAQLKEAEPDMFTRAGVTLGAPPG