Protein Info for PFLU_RS13610 in Pseudomonas fluorescens SBW25

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 238 PF00005: ABC_tran" amino acids 22 to 149 (128 residues), 105 bits, see alignment E=5.4e-34

Best Hits

Swiss-Prot: 79% identical to SSUB1_PSE14: Aliphatic sulfonates import ATP-binding protein SsuB 1 (ssuB1) from Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6)

KEGG orthology group: K02049, sulfonate/nitrate/taurine transport system ATP-binding protein (inferred from 100% identity to pfs:PFLU2789)

Predicted SEED Role

"ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component" in subsystem Alkanesulfonate assimilation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K9W8 at UniProt or InterPro

Protein Sequence (238 amino acids)

>PFLU_RS13610 ABC transporter ATP-binding protein (Pseudomonas fluorescens SBW25)
MSAQPLLDIHVARKSFAHTTVLNEVRLTLHPREAVSLLGPSGCGKSTLLRIVAGLEKDFQ
GELHSPEGEVAFVFQEPRLMPWLTVEQNIGFSDDNHYDRAWVTQLIEEVGLKGFAQALPK
ALSGGMAQRVAIARGLYSRPQVLLLDEPFSAVDAFTRMKLQDLLLQLAKHHAIALLLVTH
DVDEALYLSDRVLVMDNRPSSIRQELAVDLPHPRDRRDPLLARLKALALTELHRAHVI