Protein Info for PFLU_RS13590 in Pseudomonas fluorescens SBW25

Annotation: RidA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 126 PF01042: Ribonuc_L-PSP" amino acids 9 to 123 (115 residues), 108.5 bits, see alignment E=1.1e-35

Best Hits

Swiss-Prot: 40% identical to Y854_PYRHO: RutC family protein PH0854 (PH0854) from Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU2785)

Predicted SEED Role

"RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K9W4 at UniProt or InterPro

Protein Sequence (126 amino acids)

>PFLU_RS13590 RidA family protein (Pseudomonas fluorescens SBW25)
MNIIHTPTAAKPAGHYSQAIRHGDTLYISGQLPVSPGGRHNLSAPFAEQAQVALANVLEI
LKAAGGTPQDLVKVTVYVAGVEHWPAFDQVYAGALGDHRPARAVVPVPELHHGYLVEIEA
VARYLA