Protein Info for PFLU_RS13435 in Pseudomonas fluorescens SBW25

Annotation: MMPL family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1035 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 336 to 353 (18 residues), see Phobius details amino acids 360 to 381 (22 residues), see Phobius details amino acids 387 to 410 (24 residues), see Phobius details amino acids 431 to 456 (26 residues), see Phobius details amino acids 465 to 489 (25 residues), see Phobius details amino acids 529 to 548 (20 residues), see Phobius details amino acids 857 to 875 (19 residues), see Phobius details amino acids 882 to 902 (21 residues), see Phobius details amino acids 907 to 930 (24 residues), see Phobius details amino acids 955 to 974 (20 residues), see Phobius details amino acids 986 to 1012 (27 residues), see Phobius details PF00873: ACR_tran" amino acids 7 to 1012 (1006 residues), 1059.4 bits, see alignment E=0 PF03176: MMPL" amino acids 322 to 506 (185 residues), 29.3 bits, see alignment E=4.5e-11

Best Hits

KEGG orthology group: K07789, RND superfamily, multidrug transport protein MdtC (inferred from 69% identity to avn:Avin_28790)

Predicted SEED Role

"Acriflavin resistance plasma membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3KAV9 at UniProt or InterPro

Protein Sequence (1035 amino acids)

>PFLU_RS13435 MMPL family transporter (Pseudomonas fluorescens SBW25)
MNLSGPFIRRPVATMLLSLAIMLLGGVSFNLLPVSPLPQIDFPVIVVSASLPGASPEVMA
STVATPLERSFGAIAGITTMSSSSSQGSTRVILAFDSDRDINGAAREVQAAINASRNLLP
SGMRSMPTYKKINPSQAPIMVLSLTSDVLQKGQLYDLASTILSQSLSQVPGVGEVQIGGS
SLPAVRIELEPKALDQYGVALDDVRNTIANANQRRPKGSLEDSQRNWQIQANDQLEKAKD
YEPLLIRYQNGAALRLGDVAKISDGVEDRYNSGFFNNDSAVLLVINRQSGANIIETVRQI
KAQLPALQAVLPSSVKLSLAMDRSPVITATLHEAEMTLLIAVGLVILVVYLFLGNFRASL
IPTLAVPVSLVGTFAIMYLYGFSLNNFSLMALILATGLVVDDAIVVLENISRHIDEGVPP
MKAAYLGAEEVGFTLLSMNVSLVAVFLSILFMGGIVTNLFREFSITLSAAIIVSLIVSLT
LTPMLCARWLKPHVKDRMTGLQRWSQKINDRMVAGYATSLDWVLRHRRLTLLSLLLTIGM
NVALYVVVPKTFMPQQDTGQLIGFVRGDDGLSFSVMQPKMETFRQAVLKDPAVLSVAGFI
GGNNGTNNAVMLVRLKPISERKISAQAVIERLRKDVPLVPGGRLFLMADQDLQFGGSRDQ
TSAQYSYILQSGDLAALRLWYPKVVAALRELPELTAIDAREGRGAAQVTLIVDRDQAKRL
GIDMDMVTAVLNNAYSQRQISTIYDSLNQYQVVMEVNPKYAQDPITLNQMQVITSTGARV
PLSTIAHYENSLADDRVSHEGQFASENIAFDMAPGVTVEQGTAAIERAIAKVGLPEDVIA
KMAGTADAFAATQKGQPFMILGALVAVYLVLGILYESYIHPLTILSTLPSAGVGAMLAIY
LTGGEFSLISLLGLFLLIGVVKKNAILMIDLALQLERNDGLGPLESIRSACLLRLRPILM
TTLAAILGALPLLLGTGDGAEMRRPLGLTIIGGLVFSQVLTLYTTPVVYLYLDRARHRFN
AWRGVRTDAALDTAL