Protein Info for PFLU_RS13005 in Pseudomonas fluorescens SBW25

Annotation: fatty acid cis/trans isomerase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 763 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF06934: CTI" amino acids 82 to 762 (681 residues), 969.8 bits, see alignment E=4.9e-296

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU2663)

Predicted SEED Role

"cis/trans isomerase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K9R9 at UniProt or InterPro

Protein Sequence (763 amino acids)

>PFLU_RS13005 fatty acid cis/trans isomerase (Pseudomonas fluorescens SBW25)
MSLRLITSAVLALVACIAQADGPAPAISYTRDIQPIFTEKCVACHACYDSACQLNLGSAE
GAARGASKMPVYDGERSQATPTTRLFYDAFGKQAWQQKGFYSVLDAQGSQAALMARMLEL
GHNAPLAPNAKLPDDIVLGLNRENLCAMPGEFNAYAGAHPKEGMPLAVTGLTDQQYQTLQ
RWLASGAPIDEQGLAPSAKEALQVQQWENLFNQPGARESLVARWLFEHLFLAHIYFENGE
PGHFFQWVRSRTPSGQPIDLIATRRPNDDPGTRVYYRLWPVQGVIVHKTHITYPFSAEKM
ARIKALFYADNWQVNALPGYGPGRRANPFETFEAIPAKARYQFMLDNAEYFVRTFIRGPV
CRGQIATDVIRDNFWTLFQDPDHDLYITDARYRGQATPLLAMPGQNDDVGSVLSLWLAYR
DKRNEYEALRRDSYADLPPPSWSSLWAGNDNALLSIFRHFDSASVTKGLIGEVPQTMWLF
DYPLLERTYYQLAVNFDVFGNVSHQAQTRLYFDLIRNGAEQNFLRLMPADSRDGFMDDWY
QNSGKLKLWLDYEAIDDDKPTGLNLDEKDPKRDFAKQLLSRYGDLNASPDPINRCRGAYC
SRDGVDPALQDAEQALSRLTSRPAAGLKVIDQLPEATMLRVETAGGKRVVYSMLRNRAHS
NVAFLLGEAYRYQPGLDTLTLYPGVLSSYPNFMFNIPAQEVPEFVAQMEQAHDAKRFEKI
VDRWGVRRSHPLFWQYFHDLSRYIRETTPVEEGVLDMNRYENL