Protein Info for PFLU_RS12435 in Pseudomonas fluorescens SBW25

Annotation: non-ribosomal peptide synthetase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 500 1000 1500 2000 2500 3000 3500 4000 4679 transmembrane" amino acids 4135 to 4149 (15 residues), see Phobius details PF00668: Condensation" amino acids 47 to 496 (450 residues), 389.7 bits, see alignment E=3.7e-120 amino acids 1094 to 1517 (424 residues), 254.3 bits, see alignment E=4.2e-79 amino acids 1545 to 1970 (426 residues), 272.5 bits, see alignment E=1.3e-84 amino acids 2590 to 3022 (433 residues), 363 bits, see alignment E=4.6e-112 amino acids 3617 to 4057 (441 residues), 367.2 bits, see alignment E=2.4e-113 PF00501: AMP-binding" amino acids 518 to 865 (348 residues), 311.3 bits, see alignment 1.7e-96 amino acids 1992 to 2346 (355 residues), 257.3 bits, see alignment 4.3e-80 amino acids 3043 to 3382 (340 residues), 299.5 bits, see alignment 6.4e-93 amino acids 4079 to 4428 (350 residues), 262.5 bits, see alignment 1.1e-81 TIGR01733: amino acid adenylation domain" amino acids 538 to 938 (401 residues), 455.7 bits, see alignment E=4.7e-140 amino acids 2012 to 2421 (410 residues), 404.3 bits, see alignment E=1.9e-124 amino acids 3064 to 3456 (393 residues), 436.3 bits, see alignment E=3.8e-134 amino acids 4098 to 4502 (405 residues), 399.1 bits, see alignment E=6.9e-123 PF13193: AMP-binding_C" amino acids 922 to 990 (69 residues), 38.1 bits, see alignment (E = 4.9e-13) amino acids 2405 to 2479 (75 residues), 45.5 bits, see alignment (E = 2.3e-15) amino acids 3440 to 3508 (69 residues), 34 bits, see alignment (E = 9.5e-12) amino acids 4486 to 4564 (79 residues), 42.3 bits, see alignment (E = 2.4e-14) PF00550: PP-binding" amino acids 1017 to 1077 (61 residues), 56.4 bits, see alignment (E = 5.9e-19) amino acids 2507 to 2569 (63 residues), 47.7 bits, see alignment (E = 3.1e-16) amino acids 3535 to 3599 (65 residues), 52.5 bits, see alignment (E = 9.9e-18) amino acids 4591 to 4653 (63 residues), 52.1 bits, see alignment (E = 1.2e-17) TIGR01720: non-ribosomal peptide synthase domain TIGR01720" amino acids 1382 to 1536 (155 residues), 160.8 bits, see alignment (E = 8.5e-51)

Best Hits

Predicted SEED Role

"Non-ribosomal peptide synthetase modules, pyoverdine" in subsystem Siderophore Pyoverdine

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K9F3 at UniProt or InterPro

Protein Sequence (4679 amino acids)

>PFLU_RS12435 non-ribosomal peptide synthetase (Pseudomonas fluorescens SBW25)
MNAEDSLKLARRFIGLPLEKRQLFLQALQKEGVDFSRFPIPAGVQVEDRQALSYAQQRMW
FLWQLDPASGAYNLPGAVRLKGALSLDALEQAFASLVARHETLRTVFQRQADERLLQVAA
DTSLTVEQLDLSHLALAEREEAVNAAATRQSLLPFDLENGPLLRVQLLKLDALEHVLLLT
LHHIVSDGWSMNVLIDEFIRCYDAHERSQAPQLPALPIQYSDYALWQRRWLEAGEQARQL
EYWQARLGDEHPVLELPTDRPRPAMPSYQGSRHDFAIDPQLAAQLRTCAQKHNVTLFMLL
LGAFNVLLHRYTGQGDIRVGVPIANRNRTEVEGLIGFFVNTQVLRTELTGQTRITELLQS
IKEHALGAQAHQELPFERLVEALKVERSLSHTPLFQVMYNHQPVVADIAGVSTASGLELA
LVEWQGRTTQFDLTLDTYEKSGTLHAALTYANDLFDAPTIARMAGHWISLLQAMVAEGEQ
RIGELPMVAADEQQLLVHAWNQTAEVYPTERGIHHLIEDQVQATPGAPALVFGATTLTYA
QLDARANQLAHALREQGVGPDVLVGICVERSVEMVVGLLAILKAGGAYVPLDPEYPQERL
AYMIEDSDIQLLLSQQRLLPLLPVDGIQVMALDRPASWLDGHSTEAPKVSLHALNLAYVI
YTSGSTGKPKGAGNSHRALVNRLCWMQQAYGLDASDAVLQKTPFSFDVSVWEFFWPLMTG
ARLVVAAPGEHREPARLIETIGQHGITTLHFVPSMLQAFIHEPGVQACASLRRIVCSGEA
LPLDAQLQVFAKLPQTGLFNLYGPTEAAIDVTHWTCVDEGADSVPIGRPIANLGTYVLDA
QLNPVPAGVSGELYLGGTGLARSYHRRPALTAERFVPSPFGDGARLYRTGDRVRQRADGV
IEYLGRLDHQVKLRGLRIELGEIETRLMQHPSVREAVVLVQGGKQLVAYLVLENPAPVDL
KAWLLSSLPEYMVPSHMVPLAKLPVTANGKLDRKALPLPDATPQQAFVAPENDLQKAVAA
IWSDVLGVEPVGLDDNFFELGGDSIISIQVVSRARQAGILLSPRDLFQYQSVRSLARVAT
FEQATAIDQGPVTGEVILTPVQHSFFEQAIPARQHWNQSLLLTPREPLEPARLEAALTRL
VNHHDALRLRFVQQAGGWRQAHAEPVATASLWQSHVADEAELAALCDEAQRSLDLEQGPL
LRAVLAMMADGTQRLLLVVHHLAVDGVSWRILLEDLQQAYRNAALPAKTSAYQLWAQQLQ
RHAQTLGEQLPYWQAQTASADLPCDNPQGGLQNHLGNTLEVRLSAEHTRQLLQDAPAAYR
TQVNDLLLTALVRVISRWSEQPAALIQLEGHGREDLFDTVDLSRTVGWFTSLFPVRLHAD
GELSAAIKSVKEQLRAVPHKGIGYGLLRYLGTPDAREALSALAAPRITFNYLGQFDRQFN
ESALFVPSTQGSGQAQDPQAPLANWLTVEGQVYGGELALQWGFSREMFEVSTVQRLADDY
TAELQALIEHCCATPAGQVTPSDFPLARLTQQQLDGLPIAGPAIADLYPLSPMQQGMLFH
TLYEPEAEAYINQLRLDIEGLDLLAFGRAWQAALDRHDILRSSFHWLGLDSAHQVIQRQV
DVQLHVIEDIDADCDALAVAEREKGFALNAAPLFRLMLVRGAGTAWHLIFTSHHILMDGW
SNAQLLGEVIAHYAGHAVPAPLGQFRDYLGWLQQQASGEAFWKATLAPLQTPTLLAQALR
VPAEGKGMAEHQVLLGDDFTRALGEFARRHKVTLNTVLQGAWSLLLQRYTGQDCVAFGAT
VAGRSAPLPGIEQQLGLFINTLPIVSAASPALSVAGWLSELQALNLSLRDHEHVPLYDIQ
GWAGQQGTALFDTLLVFENFPVAEALKQGAPAGLTFGRLHNHEQTHYPLTLGIELGASLR
LEFGYDQARFSAQQVARLSGNLRHLLVQMLADAQAPLGNLRLLDAATRRDVLAHSRAPGA
APRQLRVHERIAAQAAATPDALAVQAGDACLSYAQLNDRANRLAHRLLALGVGPGQRVGL
AARRGPQLIVSLLAVLKSGAAYVPLDPNYPTERLAYMLADSRLDLLLSETGLLADLLLPQ
GLVRLDFTAAGAELADYPSTHPANQAAAADLAYVIYTSGSTGLPKGVAIDHAALSQFCDS
AEAYSRLSAADRVLQFATFSFDGFVEQCYPPLCVGAALIMRGDELWDAGQLAREIVEQGV
TLADLPAAYWYLLAKECAVDRRTLGNLRQVHVGGEAMSVEGLRAWHAAGLGGVRLVNTYG
PTEATVVSSVHDCQWADASDAFGVPIGRAIAGRALYVLDSGFELLATEGVGELCIGAEHG
LAQRYFDRPALTAERFLPDPFSAVPGARLYRSGDLARYNEAGALEYVGRIDHQVKIRGFR
VEMGEIEASLQALPSLREAAVIAQSSATGTQLVAYVVPVTGQTLDPQALAATLRQSLPDY
MVPGHWVILEALPLNNNGKLDRRALPAPDLNQARQAYLAPQNPLQARLASIWQAVLQVEQ
VGLNDHFFERGGHSLLATQVVSRVRHDLKLEVPLRTLFEQPTLEAFAAACAGLQTARALP
LVAVTRDQPLALSFAQERQWFLWQLDPTSAAYHVPSALHLRGRLDVAALEQAFQALVQRH
EPLRTTFVEEGEHTWQVIHPRLAMPIEHQRVAASAIEHAVAQEIQRPFDLVNGPLMRVNL
LEVEAEHHVLVITQHHIISDGWSMQVMVDELVALYQGQSPLPTLPIQYVDYAQWQRDWMA
AGEKQRQLDYWRTRLGTEHPVFELPLDHPRPALQSHRGARRQVQLDNALVTELKALAQRQ
EVTLFVVLLASFQTLLHRYSGQSRIRVGVPIANRNRLETERLLGFFVNTQVLQADVHGQM
AFDQLLAQVKQQALDAQAHQDLPFEQLVEALQPERSLSHNPLFQVMFNHQDSLRAAPLQL
PGLDLQAVDWAGHSTQFDLNLETEESAEGLWASLTYATDLFDATTVERLAEHWQNLLRAV
VHDASQAVDELAMLSAPQWQQMVEAWNDTSVDYPRERCVHRLFEAQALAQPDALALQFNG
QALSYGELNRRANRLAHRLIAAGVGPDVLVAVHVERSLDMVIGLLATLKAGGAYVPLDPQ
FPADRLAFMLEDSRARVLLTQPHLDGSLAHSQGVQVLMVEADDNAAEHNPQVNVTPEHLA
YVIYTSGSTGKPKGVMVRHQALCSFTCGMAGTLDIGADARVLSLTTFSFDIFALELYVPL
TVGATVLLSGQELALDPEAIIDLVHSQSANVLQATPSTWRMLLESPRAQRLRGIKSLCGG
EALPSDLAQRLLDLQGPLWNLYGPTETTIWSAAHRLHEAQPFVGRPIANTALFILNAGLT
PSPVGAAGELLIGGVGLARGYHERPALTAERFVPNPYGAPGERLYRTGDLARYRDDGVVE
YIGRVDHQVKVRGFRIELGEIEACLREQAGIREAVVLADNDRLIAYLVSSAPDAPEVYKA
VLRERLPDYMVPAHLMFLDSLPLTPNGKLDRKALPAVDAALLRTGHVAPVTPREQQVAAI
WADVLDLPQVGLDDHFFELGGHSLLATRVVSRVRQALALEVALKTLFEHPLLGDFVQALG
EEGVVAPALLKADRRQPLPLSYAQERQWFLWQLDPHSTAYHIPSALRLRGPLDLGALQRS
FDTLLARHESLRTHVRQDAAATVQVIEDSGLIEIDLADTDEASLKTRIAEVVAQPFELLR
GPLLRVNLLRLAADDHVLVLVQHHIVSDGWSMQLMVEELVQLYAAFSQGHMPDLPALPIQ
YADYALWQRNWMEAGEKARQLAYWQAQLGGVQPVLELPFDYLRPAVQSHRGARLGIELQP
QLLAGLRRLAQGAGVTLPMVLLASYQALLHRYSGQEDVRVGVPIANRNRLETEGLIGFFV
NTQVLKADIHGQMSVVQLLQQVRQRSLEAQAHQDLPFEQLVEALQPERSMSLSPLFQVLF
NHRVTSAANHLQRLTELDVEVLSWDEGVAQFDLALDVEESQATLRASLNYATDLFAPATI
ERMAGHWQNLLQAMVADQQQPISQLNLLGQDEQQHILQLWDQTDAGFSAKRMVHELVADR
ARENPEAVAVKFDAQTLSYGELDRQANRLAHALIARGVGPEVRVAIAMPRSAEIMVAFLA
VMKAGGVYVPLDIEYPRDRLLYMMEDSRAQLLLTHTRALQQLPIPDGLDSLAIDRTEEWT
GFSDTAPQVKLDGDNLAYVIYTSGSTGMPKGVAVSHGPLVAHIIATGERYETSPADCELH
FMSFAFDGSHEGWMHPLINGASVLIRDDSLWLPEYTYQQMHRHHVTMAVFPPVYLQQLAE
HAERDGNPPKVRVYCFGGDAVAQASYDLAWRALKPTYLFNGYGPTETVVTPLLWKARKGD
PCGAVYAPIGTLLGNRSGYVLDVQLNLQPIGVAGELYLGGEGVARGYLERPALTAERFVP
DPFGKPGSRVYRSGDLTRGRPDGVVDYLGRVDHQVKIRGFRIELGEIEARLREQDNVGET
VVVAQEGPTGKQLVAYVVPADTHLADEAEFRDSLRRALKTHLPDYMVPTHFMFLAHMPLT
PNGKLDRKGLPEPDASLLQQAYVAPETELEQQVAAIWADVLRLPQVGLNDNFFEVGGHSL
LAIQITSRVQAELGLEVPLLEVFQTETLRAYVQAAATFRAGSAEDFDDLRDFLSELEAI